Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000653

染色体: Chr07 坐标: 4395153-4398427 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000653
名称SmilChr07G000653
描述uncharacterized SmilChr07G000653
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向4395153 - 4398427 / -

ID 对照

NCBI Gene IDLOC130991791
GeneID130991791
locus_tag-
NCBI NameLOC130991791
原始查询SmilChr07G000653

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292]; symbol=AT4G16070; hit=AT4G16070; species=arabidopsis; confidence=high
产物lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292]; symbol=AT4G16070; hit=AT4G16070; species=arabidopsis; confidence=high
ArabidopsisAT4G16070 (AT4G16070)
lipase class 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:827292]
identity=64.8; qcov=1.02; evalue=0; confidence=high
RiceOs01g0309900 (OJ1116_C07.9)
-
identity=60.2; qcov=0.992; evalue=0; confidence=high
GOGO:0016042 (lipid catabolic process)
KEGG-
PfamPF01764 (Lipase_3); PF03893 (Lipase3_N)
InterPro-
eggNOG-
NRGeneID:130991791

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast membrane 叶绿体膜 1.00000 XP_057772175.1
2 Chloroplast 叶绿体 0.80000 XP_057772175.1
3 Nucleus 细胞核 0.00000 XP_057772175.1
4 Chromosome 染色体 0.00000 XP_057772175.1
5 Centromere 着丝粒 0.00000 XP_057772175.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:4395339 C T EMS_canonical_SNV CDS_variant 4 A18,B35,B82,C85
Chr7:4395451 G A EMS_canonical_SNV CDS_variant 1 A16
Chr7:4395462 C T EMS_canonical_SNV CDS_variant 2 B19,C1
Chr7:4395465 G A EMS_canonical_SNV CDS_variant 2 A24,C61
Chr7:4395482 C T EMS_canonical_SNV CDS_variant 1 B8
Chr7:4395485 C T EMS_canonical_SNV CDS_variant 1 B132
Chr7:4395505 G A EMS_canonical_SNV CDS_variant 5 B117,B18,B28,B80,B84
Chr7:4395525 G A EMS_canonical_SNV CDS_variant 1 B8
Chr7:4395570 G A EMS_canonical_SNV CDS_variant 2 C65,C84
Chr7:4395653 C T EMS_canonical_SNV CDS_variant 2 C65,C84
Chr7:4395656 C T EMS_canonical_SNV CDS_variant 2 B87,D6
Chr7:4395732 G A EMS_canonical_SNV CDS_variant 2 C65,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772175.1
639 aa
N
1
320
639
Lipase3_N
Lipase_3
C
PF03893 Lipase3_N 49-117 aa PF01764 Lipase_3 184-321 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772175.1 Pfam PF03893 Lipase3_N Domain 49 117 3e-17 63.1 Lipase 3 N-terminal region
XP_057772175.1 Pfam PF01764 Lipase_3 Domain 184 321 6.3e-30 104.6 Lipase (class 3)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916192.1
ATTACGTCATTACGCAGTTGCGTTAAAGCTTCAGCGAGTGACTGTTGAACCCCCCTTTTTCCCAATCCTTCTCACTCTGCACAAAACAATTAGAAATTAATAAAAATAATCAATCAACAGATTATGCAAATGGAATTCTAGCATAACTTCCGAATCTCTGTAATAGTAGCTCCCTTTGATTTACATGTTTTGTATAAAACGCGTGATTTAGGGGAAAGAAGTTCTTTTATTGTTGATTTGGTCGGAGCGGAGCTCCGATG...

CDS

1 records

下载 CDS FASTA
LOC130991791
ATGGCAGCCACGACAATGGCGACAGCGGCGGGGGCGGTGGTGCTGCTGTACTACGTGGTGAGCCGGCGTATTGCGTCGGCGGCGGAAGGGGAGGATTCATCCGGCGGCGATTGCTCGAAATCGAAGAGCAGATCGGTGAAGAGACGGCTGTCGCGGCGGCCGGCTCAAGCGCCGGCGACTTGGCTGGAGACGATTTATACGCTGTCGGAGACTTTGAGGTTCACGTACGCCGAGACGTTGGGGAAATGGCCGATCGCTGA...

Protein

1 records

下载 Protein FASTA
XP_057772175.1
MAATTMATAAGAVVLLYYVVSRRIASAAEGEDSSGGDCSKSKSRSVKRRLSRRPAQAPATWLETIYTLSETLRFTYAETLGKWPIADLAFGINYLIRRQGNLQVASVYAGENAVQLKGVDIIDQLYYYLRLLTLCMLFSKKPFPVFLESAGFTEANVLLQKPKAGILKPAFTILRDENSKCFLLLIRGTHSIKDTLTAATGAVVPFHHSVLDDGGVSNLVLGYAHCGMVAAARWIAKLSTPTLLKAVDQNPDYEVKIVGH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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