Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000670`

染色体: Chr07 坐标: 4549154-4553949 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000670`
名称	SmilChr07G000670
描述	(-)-5-epieremophilene synthase STPS1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4549154 - 4553949 / `-`

ID 对照

NCBI Gene ID	`LOC130991815`
GeneID	`130991815`
locus_tag	`-`
NCBI Name	`LOC130991815`
原始查询	`SmilChr07G000670`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	(-)-5-epieremophilene synthase STPS1
产物	(-)-5-epieremophilene synthase STPS1
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=41.2; qcov=1; evalue=2.36e-132; confidence=medium
Rice	`Os08g0139700` (OsTPS29) - identity=38.8; qcov=1.01; evalue=3.77e-112; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:130991815

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057772202.1`
2	Cytoplasm	细胞质	0.60000	`XP_057772202.1`
3	Chloroplast	叶绿体	0.20000	`XP_057772202.1`
4	Nucleus	细胞核	0.00000	`XP_057772203.1`
5	Chromosome	染色体	0.00000	`XP_057772203.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4549351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B103,C86
`Chr7:4549372`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr7:4549426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr7:4549516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:4549546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr7:4549673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,B117
`Chr7:4549679`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:4549688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr7:4549831`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr7:4549843`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A20,B107,C57
`Chr7:4550002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:4550107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772202.1

546 aa

273

546

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 20-193 aa PF03936 Terpene_synth_C 250-488 aa PF19086 Terpene_syn_C_2 290-488 aa

XP_057772203.1

498 aa

249

498

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 8-145 aa PF03936 Terpene_synth_C 202-440 aa PF19086 Terpene_syn_C_2 242-440 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772202.1`	Pfam	`PF01397`	Terpene_synth	Repeat	20	193	1.4e-54	185.4	Terpene synthase, N-terminal domain
`XP_057772202.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	250	488	5e-90	301.7	Terpene synthase family, metal binding domain
`XP_057772202.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	290	488	2.2e-46	158.8	Terpene synthase family 2, C-terminal metal binding
`XP_057772203.1`	Pfam	`PF01397`	Terpene_synth	Repeat	8	145	9.4e-49	166.4	Terpene synthase, N-terminal domain
`XP_057772203.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	202	440	3.1e-90	302.4	Terpene synthase family, metal binding domain
`XP_057772203.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	242	440	2e-46	159.0	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916220.1
GGAGTTTCTATGCAGGTTGGATTTTAGGAGAATTCTCACCGATCCCTTGGGAGACGATTTTGCTTACTGCTGTCTGCGCAGTGTGGGCATACCGGCTGACTGCCAGATATTTTTGGTGTAAAACGACGCACCATTTATATTATCGGCACAAATTCAGCGGCCCATCGCGAATTTCTCCCCAAGTTTGTGGGGCGACCAGTTCATCAAAAATGATCCTGGTGCTAAGGCTGCGGAGAAACATTGCAAGGCAGTTGAAGAGT...

XM_057916219.1
TATTTTGCACAGCACCATCAACTTCTGCTTTCAGCTCTTTGCAATACACACTTAGCATACAAAATTCAAATTCTCATACAAAGAATGGCTACAACACAGGCACAAATTCAGCGGCCCATCGCGAATTTCTCCCCAAGTTTGTGGGGCGACCAGTTCATCAAAAATGATCCTGGTGCTAAGGCTGCGGAGAAACATTGCAAGGCAGTTGAAGAGTTGAAGAAGGAAGTTATGAATATGATAACTGCTGCTGGAAGCAATCT...

CDS

2 records

下载 CDS FASTA

LOC130991815
ATGGCTACAACACAGGCACAAATTCAGCGGCCCATCGCGAATTTCTCCCCAAGTTTGTGGGGCGACCAGTTCATCAAAAATGATCCTGGTGCTAAGGCTGCGGAGAAACATTGCAAGGCAGTTGAAGAGTTGAAGAAGGAAGTTATGAATATGATAACTGCTGCTGGAAGCAATCTTGTTGAAGCGATGAATCTTATTGACACGCTCGAACGTCTTGGCATTTCTTATCACTTTGAAAAGGAGATTGACCAAAAACTGAA...

LOC130991815
ATGAATATGATAACTGCTGCTGGAAGCAATCTTGTTGAAGCGATGAATCTTATTGACACGCTCGAACGTCTTGGCATTTCTTATCACTTTGAAAAGGAGATTGACCAAAAACTGAAACATTTTTTCAATCTAAATACAGATTATAGTGATGAGTCCTTTGATTTGTACACTGTTTCTCTTCATTTTCGATTATTCAGGCAACATGGCCACCGTATTTCTTCTGATATTTTTGGTAGATGGATCGATGAGAGCGGCAAATT...

Protein

2 records

下载 Protein FASTA

XP_057772202.1
MATTQAQIQRPIANFSPSLWGDQFIKNDPGAKAAEKHCKAVEELKKEVMNMITAAGSNLVEAMNLIDTLERLGISYHFEKEIDQKLKHFFNLNTDYSDESFDLYTVSLHFRLFRQHGHRISSDIFGRWIDESGKFKEGLKNDGKGLLSLYEASYLRTRGETILDDALEFATATLNSIAPHLESPLSKQVVHALIQPMHYGNPRIEAHNFISIYEEYQDKNEFLLRFAKLDYNLLQMLHKEELHEVSRWWKELDLVSKLPY...

XP_057772203.1
MNMITAAGSNLVEAMNLIDTLERLGISYHFEKEIDQKLKHFFNLNTDYSDESFDLYTVSLHFRLFRQHGHRISSDIFGRWIDESGKFKEGLKNDGKGLLSLYEASYLRTRGETILDDALEFATATLNSIAPHLESPLSKQVVHALIQPMHYGNPRIEAHNFISIYEEYQDKNEFLLRFAKLDYNLLQMLHKEELHEVSRWWKELDLVSKLPYARDRVVECFFWAMGVYHEPQYSRARIMLTKTITMTSIIDDTYDAYGVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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