Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000677`

染色体: Chr07 坐标: 4607119-4611033 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000677`
名称	SmilChr07G000677
描述	3-ketoacyl-CoA thiolase 2, peroxisomal
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4607119 - 4611033 / `-`

ID 对照

NCBI Gene ID	`LOC130991840`
GeneID	`130991840`
locus_tag	`-`
NCBI Name	`LOC130991840`
原始查询	`SmilChr07G000677`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-ketoacyl-CoA thiolase 2, peroxisomal
产物	3-ketoacyl-CoA thiolase 2%2C peroxisomal
Arabidopsis	`AT2G33150` (PKT3) peroxisomal 3-ketoacyl-CoA thiolase 3 [Source:NCBI gene (formerly Entrezgene);Acc:817876] identity=88.2; qcov=1; evalue=0; confidence=high
Rice	`Os02g0817700` (OsI57) - identity=77.2; qcov=0.972; evalue=0; confidence=high
GO	GO:0003988 (acetyl-CoA C-acyltransferase activity); GO:0005777 (peroxisome); GO:0006635 (fatty acid beta-oxidation); GO:0010124 (phenylacetate catabolic process)
KEGG	smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00592 (alpha-Linolenic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01040 (Biosynthesis of unsaturated fatty acids - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00108 (Thiolase_N); PF02803 (Thiolase_C)
InterPro	-
eggNOG	-
NR	GeneID:130991840

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057772236.1`
2	Mitochondrion	线粒体	0.20000	`XP_057772236.1`
3	Chloroplast	叶绿体	0.20000	`XP_057772236.1`
4	Nucleus	细胞核	0.00000	`XP_057772236.1`
5	Chromosome	染色体	0.00000	`XP_057772236.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4607329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B78,B87,C27,C52
`Chr7:4607342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B78,B87,C27,C52
`Chr7:4607545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr7:4607652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr7:4608369`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:4608572`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:4608587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,B66,B86,C76
`Chr7:4608588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C12
`Chr7:4608596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,B14,C48
`Chr7:4608698`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B35,B82,C85
`Chr7:4608749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B127
`Chr7:4608897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B103,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772236.1

464 aa

232

464

Thiolase_N

Thiolase_C

PF00108 Thiolase_N 54-309 aa PF02803 Thiolase_C 318-440 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772236.1`	Pfam	`PF00108`	Thiolase_N	Domain	54	309	7.3e-78	262.2	Thiolase, N-terminal domain
`XP_057772236.1`	Pfam	`PF02803`	Thiolase_C	Domain	318	440	2.1e-49	167.0	Thiolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916253.1
GTGTCAGAAAAATGGATCTATCAGTATTATCATTTTCACACTTCCCTATGAACTCTTCATTCATATATAAATACACGCAAACACGCATCAAATTTGTAATCTTCATTTCCCCAATTTTCTGCTCTGATTATATATTTATAGAGAAAGAGAGAAATGGAGAAAGCAACTGAGAGGCAGAGGATTTTGCTTCAGCATCTACGACCATCGTTCACTAGTTCTTCTCTCGAAGATGTCGATTCTTCAATTTCTGCATCTATATG...

CDS

1 records

下载 CDS FASTA

LOC130991840
ATGGAGAAAGCAACTGAGAGGCAGAGGATTTTGCTTCAGCATCTACGACCATCGTTCACTAGTTCTTCTCTCGAAGATGTCGATTCTTCAATTTCTGCATCTATATGCTCAGCTGGGGACAGTGCAGCATATCAGAGGTCTTCTATCTTTGGTGATGACGTGGTTATAGTGGCTGCCCACCGGACTGCTCTATGCAAGTCGAAGAGGGGTGGCTTCAAAGATACCTATCCCGATGATTTACTTGCTCCTGTTCTGAGGGC...

Protein

1 records

下载 Protein FASTA

XP_057772236.1
MEKATERQRILLQHLRPSFTSSSLEDVDSSISASICSAGDSAAYQRSSIFGDDVVIVAAHRTALCKSKRGGFKDTYPDDLLAPVLRALIEKTNVNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGIESMTTNPMAWEGSVNPRVKTMVQAQDCLLPMGITSENVAHRFGVTRQEQDQAAVDSHRKAASATASGKFKDEIIPVKTKIVDPKSGDEKEVTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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