Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000687`

染色体: Chr07 坐标: 4691215-4695631 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000687`
名称	SmilChr07G000687
描述	uncharacterized SmilChr07G000687
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4691215 - 4695631 / `-`

ID 对照

NCBI Gene ID	`LOC130991847`
GeneID	`130991847`
locus_tag	`-`
NCBI Name	`LOC130991847`
原始查询	`SmilChr07G000687`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:817882]; symbol=AT2G33205; hit=AT2G33205; species=arabidopsis; confidence=high
产物	Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:817882]; symbol=AT2G33205; hit=AT2G33205; species=arabidopsis; confidence=high
Arabidopsis	`AT2G33205` (AT2G33205) Serinc-domain containing serine and sphingolipid biosynthesis protein [Source:NCBI gene (formerly Entrezgene);Acc:817882] identity=66; qcov=0.926; evalue=0; confidence=high
Rice	`Os04g0506300` - identity=59.8; qcov=0.866; evalue=1.22e-155; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF03348 (Serinc)
InterPro	-
eggNOG	-
NR	GeneID:130991847

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057772244.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057772244.1`
3	Lysosome	溶酶体	0.20000	`XP_057772244.1`
4	Endosome	内体	0.20000	`XP_057772244.1`
5	Endosome membrane	内体膜	0.20000	`XP_057772244.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4691377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,B86,C10,C76
`Chr7:4691521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B2,C8
`Chr7:4691895`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B4,B52,B58,C40,C65
`Chr7:4692749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr7:4692833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:4692857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:4693654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,B79,C34
`Chr7:4694586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr7:4694633`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,C49,C63,D8
`Chr7:4694636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B2,B44,B89
`Chr7:4694673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B35,C39,C86
`Chr7:4694674`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B2,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772244.1

420 aa

210

420

Serinc

PF03348 Serinc 37-331 aa PF03348 Serinc 328-404 aa

XP_057772245.1

419 aa

210

419

Serinc

PF03348 Serinc 37-330 aa PF03348 Serinc 327-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772244.1`	Pfam	`PF03348`	Serinc	Domain	37	331	1.1e-73	249.3	Serine incorporator (Serinc)
`XP_057772244.1`	Pfam	`PF03348`	Serinc	Domain	328	404	1.1e-73	249.3	Serine incorporator (Serinc)
`XP_057772245.1`	Pfam	`PF03348`	Serinc	Domain	37	330	4.7e-73	247.3	Serine incorporator (Serinc)
`XP_057772245.1`	Pfam	`PF03348`	Serinc	Domain	327	403	4.7e-73	247.3	Serine incorporator (Serinc)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916262.1
GCATGTGACAAAAGTGGGTTGTTAATATGATTCATTTTTCTGGGGCTTAGTTTTTTCCCCCTCTCTCTTTTTCTCTTGCTAAAGAACAAAAAAGTGAGTTTCTAGCAGCTTATTTATAGCCTTTTCTTGATGAAGTGACTGTGTGTGTGTGAATTCTCTCTCCTACAGAGAGAGAAGGGAAGTTTGAAGAAGCTTGTCTCTCCATCACCAAGAGTGAGAGGGAAAGAAAAAGGGAGCGATTAGTTTTCCTCGATTAGGAT...

XM_057916261.1
ACAAAAGTGGGTTGTTAATATGATTCATTTTTCTGGGGCTTAGTTTTTTCCCCCTCTCTCTTTTTCTCTTGCTAAAGAACAAAAAAGTGAGTTTCTAGCAGCTTATTTATAGCCTTTTCTTGATGAAGTGACTGTGTGTGTGTGAATTCTCTCTCCTACAGAGAGAGAAGGGAAGTTTGAAGAAGCTTGTCTCTCCATCACCAAGAGTGAGAGGGAAAGAAAAAGGGAGCGATTAGTTTTCCTCGATTAGGATGAATGAG...

CDS

2 records

下载 CDS FASTA

LOC130991847
ATGAATGAGAATGGCCGGAGTGTCGAGCCTGCAACGACAGGGACCTCATCGAGGGAGAATGGAGGCTCCCGTGGCCAAGAACTGCCCGGTGCAGGGCAGAAGGATGTTAAGTGCTCTGCCCGGAAGAAGAAGTCTTTGAGGGCTCGTTATGCTTACGGTGTCGTGTTTCTATTGACGAATATTATAGCTTGGCTCTTCAGGGATTATGGTGAAAGGATTTTGCCTATGCTGCCTTACTCAAGAGCATGCGGGGCGCAGGA...

Protein

2 records

下载 Protein FASTA

XP_057772244.1
MNENGRSVEPATTGTSSRENGGSRGQELPGAGQKDVKCSARKKKSLRARYAYGVVFLLTNIIAWLFRDYGERILPMLPYSRACGAQERECYHTMGVLRVSLGCFIFFFLMFLTTCNTSKLYQVRAAWHSGWWGLKSVMLLISFVIPFFIPSDYIQLYGELARVGAGIFLILQLISVIEFITWWNNYWMSDDKKKSSSCSIGLFMSTVFYIASVCGIAVMYVLYASKMSCTLNIFFITWTGVLLIVMMVISLHSKVNRGLL...

XP_057772245.1
MNENGRSVEPATTGTSSRENGGSRGQELPGAGQKDVKCSARKKKSLRARYAYGVVFLLTNIIAWLFRDYGERILPMLPYSRACGAQERECYHTMGVLRVSLGCFIFFFLMFLTTCNTSKLYQVRAAWHSGWWGLKSVMLLISFVIPFFIPSDYIQLYGELARVGAGIFLILQLISVIEFITWWNNYWMSDDKKKSSCSIGLFMSTVFYIASVCGIAVMYVLYASKMSCTLNIFFITWTGVLLIVMMVISLHSKVNRGLLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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