Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000695`

染色体: Chr07 坐标: 4766820-4774383 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000695`
名称	SmilChr07G000695
描述	7-hydroxymethyl chlorophyll a reductase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4766820 - 4774383 / `+`

ID 对照

NCBI Gene ID	`LOC130991832`
GeneID	`130991832`
locus_tag	`-`
NCBI Name	`LOC130991832`
原始查询	`SmilChr07G000695`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	7-hydroxymethyl chlorophyll a reductase, chloroplastic
产物	7-hydroxymethyl chlorophyll a reductase%2C chloroplastic
Arabidopsis	`AT1G04620` (HCAR) coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family [Source:NCBI gene (formerly Entrezgene);Acc:839472] identity=84.3; qcov=0.934; evalue=0; confidence=high
Rice	`Os04g0320100` (OsHCAR) - identity=82; qcov=0.919; evalue=0; confidence=high
GO	GO:0009507 (chloroplast); GO:0033354 (chlorophyll cycle); GO:0090415 (7-hydroxymethyl chlorophyll a reductase activity)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04422 (FrhB_FdhB_N); PF04432 (FrhB_FdhB_C)
InterPro	-
eggNOG	-
NR	GeneID:130991832

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772224.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057772224.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057772224.1`
4	Chloroplast thylakoid	类囊体	0.20000	`XP_057772224.1`
5	Nucleus	细胞核	0.00000	`XP_057772225.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4767137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:4767185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,C77
`Chr7:4767188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr7:4768570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,B38,B39
`Chr7:4768612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B17,B44,B67,D5
`Chr7:4768613`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr7:4768757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B67,D5
`Chr7:4769138`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr7:4769167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,C12,D6
`Chr7:4769735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr7:4770871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,C60
`Chr7:4772098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772224.1

496 aa

248

496

FrhB_FdhB_N

FrhB_FdhB_C

PF04422 FrhB_FdhB_N 115-189 aa PF04432 FrhB_FdhB_C 198-346 aa

XP_057772225.1

471 aa

236

471

FrhB_FdhB_N

FrhB_FdhB_C

PF04422 FrhB_FdhB_N 115-189 aa PF04432 FrhB_FdhB_C 198-346 aa

XP_057772226.1

458 aa

229

458

FrhB_FdhB_N

FrhB_FdhB_C

PF04422 FrhB_FdhB_N 115-189 aa PF04432 FrhB_FdhB_C 198-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772224.1`	Pfam	`PF04422`	FrhB_FdhB_N	Family	115	189	2.8e-25	88.9	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
`XP_057772224.1`	Pfam	`PF04432`	FrhB_FdhB_C	Domain	198	346	7.9e-27	94.7	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
`XP_057772225.1`	Pfam	`PF04422`	FrhB_FdhB_N	Family	115	189	2.6e-25	89.0	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
`XP_057772225.1`	Pfam	`PF04432`	FrhB_FdhB_C	Domain	198	346	6.7e-27	94.9	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus
`XP_057772226.1`	Pfam	`PF04422`	FrhB_FdhB_N	Family	115	189	2.5e-25	89.1	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term
`XP_057772226.1`	Pfam	`PF04432`	FrhB_FdhB_C	Domain	198	346	6.8e-27	94.9	Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916242.1
AAATGTGAATTCGGATAAAACGACGACGTCCCAGAACATGTTGCCATGGCGCAAAATCCAAATATAAATGCAAAATCCAAACTCTGTGGCGCAAAATCATCAATCTTGATCACCTCAGATATTATTTTTACCAGTCTGTGTTGCCATGGCTACAGCTATGGCTGCTGGAATTCTCTCCCATAATCCCTTCTCTCTCTCCATTGTTTCACAATCTTCTACAGAAGGTACAACCTCCAAGTCTGCCAAGCTGAGAGACGACT...

XM_057916241.1
AAATGTGAATTCGGATAAAACGACGACGTCCCAGAACATGTTGCCATGGCGCAAAATCCAAATATAAATGCAAAATCCAAACTCTGTGGCGCAAAATCATCAATCTTGATCACCTCAGATATTATTTTTACCAGTCTGTGTTGCCATGGCTACAGCTATGGCTGCTGGAATTCTCTCCCATAATCCCTTCTCTCTCTCCATTGTTTCACAATCTTCTACAGAAGGTACAACCTCCAAGTCTGCCAAGCTGAGAGACGACT...

CDS

3 records

下载 CDS FASTA

LOC130991832
ATGGCTACAGCTATGGCTGCTGGAATTCTCTCCCATAATCCCTTCTCTCTCTCCATTGTTTCACAATCTTCTACAGAAGGTACAACCTCCAAGTCTGCCAAGCTGAGAGACGACTGGAGGCAAAAATCTAGACCCATCCCCCCTGGTGGGACCTACCCCGCCAAGGATCATTGCAGCCGCTGCGGGTTGTGCGATACATACTACATTGCCCATGTGAAGAATGCTTGTGCTTTTCTCGGAGATGGCATGTCAAAAATTGA...

Protein

3 records

下载 Protein FASTA

XP_057772224.1
MATAMAAGILSHNPFSLSIVSQSSTEGTTSKSAKLRDDWRQKSRPIPPGGTYPAKDHCSRCGLCDTYYIAHVKNACAFLGDGMSKIEVLEPIVHGRGREIDSLDETYMGVYEDLLYARKTQPVEGAQWTGIVTTIAMEMLRTGMVEAVVCVQSDPEDRFTPRPILARTPEEVLAAKGVKPTLSPNLDTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYEFM...

XP_057772225.1
MATAMAAGILSHNPFSLSIVSQSSTEGTTSKSAKLRDDWRQKSRPIPPGGTYPAKDHCSRCGLCDTYYIAHVKNACAFLGDGMSKIEVLEPIVHGRGREIDSLDETYMGVYEDLLYARKTQPVEGAQWTGIVTTIAMEMLRTGMVEAVVCVQSDPEDRFTPRPILARTPEEVLAAKGVKPTLSPNLDTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYEFM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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