Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000707`

染色体: Chr07 坐标: 4914828-4925957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000707`
名称	SmilChr07G000707
描述	putative late blight resistance protein homolog R1A-10
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4914828 - 4925957 / `+`

ID 对照

NCBI Gene ID	`LOC130991771`
GeneID	`130991771`
locus_tag	`-`
NCBI Name	`LOC130991771`
原始查询	`SmilChr07G000707`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1A-10
产物	putative late blight resistance protein homolog R1A-10
Arabidopsis	`AT5G43470` (RPP8) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:834367] identity=28.4; qcov=1.03; evalue=1.64e-89; confidence=low
Rice	`Os10g0183000` (OsLSR) - identity=26.1; qcov=1.03; evalue=5.07e-72; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130991771

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057772146.1`
2	Nucleus	细胞核	0.00000	`XP_057772146.1`
3	Chromosome	染色体	0.00000	`XP_057772146.1`
4	Centromere	着丝粒	0.00000	`XP_057772146.1`
5	Chromatin	染色质	0.00000	`XP_057772146.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4914997`	`GT`	`G`	1bp_deletion	frameshift_variant	33	A13,A21,A6,A7,A9,B11,B124,B18,B3,B30,B4,B5,B52,B54,B55,B61,B74,B75,B76,B9,B90,B92,C21,C31,C34,C35,C37,C40,C43,C45,C5,C50,C63
`Chr7:4915005`	`T`	`TC`	1bp_insertion	frameshift_variant	37	A13,A21,A6,A7,A9,B10,B101,B11,B124,B18,B3,B30,B35,B4,B5,B52,B54,B55,B61,B74,B75,B76,B88,B9,B90,B92,C21,C31,C34,C35,C37,C40,C43,C45,C5,C50,C63
`Chr7:4915038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:4915086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:4915137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B99,C14,C3,C73
`Chr7:4915228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:4915264`	`A`	`AG`	1bp_insertion	frameshift_variant	54	A1,A21,A22,A25,A6,A7,A9,B10,B101,B108,B11,B12,B124,B132,B139,B18,B3,B31,B36,B42,B47,B48,B5,B52,B54,B55,B58,B61,B65,B66,B7,B74,B75,B76,B9,B90,B92,C21,C23,C25,C31,C34,C35,C37,C40,C43,C45,C47,C5,C60,C63,C65,C7,C87
`Chr7:4915266`	`TGC`	`T`	2bp_deletion	frameshift_variant	55	A1,A21,A22,A25,A6,A7,A9,B10,B101,B108,B11,B12,B124,B132,B139,B18,B3,B31,B36,B42,B43,B47,B48,B5,B52,B54,B55,B58,B61,B65,B66,B7,B74,B75,B76,B9,B90,B92,C21,C23,C25,C31,C34,C35,C37,C40,C43,C45,C47,C5,C60,C63,C65,C7,C87
`Chr7:4915313`	`ATC`	`A`	2bp_deletion	frameshift_variant	39	A1,A21,A22,A6,A9,B10,B108,B11,B124,B132,B139,B18,B3,B36,B42,B47,B5,B52,B55,B61,B65,B66,B74,B75,B76,B88,B9,B90,B92,C21,C25,C31,C34,C35,C45,C60,C63,C7,C87
`Chr7:4915362`	`T`	`TGA`	2bp_insertion	frameshift_variant	30	A21,A9,B10,B108,B11,B12,B124,B139,B18,B3,B35,B36,B47,B5,B52,B55,B61,B66,B75,B9,B90,C21,C25,C31,C35,C40,C45,C60,C63,C7
`Chr7:4915363`	`AGT`	`A`	2bp_deletion	frameshift_variant	30	A21,A9,B10,B108,B11,B12,B124,B139,B18,B3,B35,B36,B47,B5,B52,B55,B61,B66,B75,B9,B90,C21,C25,C31,C35,C40,C45,C60,C63,C7
`Chr7:4923115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B127,C15,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772146.1

875 aa

438

875

Rx_N

NB-ARC

WHD_DRP

LRR_14

PF18052 Rx_N 5-88 aa PF00931 NB-ARC 151-316 aa PF23559 WHD_DRP 410-480 aa PF23598 LRR_14 534-856 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772146.1`	Pfam	`PF18052`	Rx_N	Domain	5	88	2.4e-15	57.1	Rx N-terminal domain
`XP_057772146.1`	Pfam	`PF00931`	NB-ARC	Domain	151	316	1.6e-40	139.2	NB-ARC domain
`XP_057772146.1`	Pfam	`PF23559`	WHD_DRP	Domain	410	480	7.3e-21	74.7	Disease resistance protein Winged helix domain
`XP_057772146.1`	Pfam	`PF23598`	LRR_14	Repeat	534	856	9.4e-21	74.7	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916163.1
TAAAAAATATTTTTAAAATAATAAATATAAGCATGATACACCGACGCATTGGATCTCATCCCAAAATTAACATGTATAAAACCACTCGCCGCTGTATTGTGTCGTAGCTAAATAGACTACTAAGTGAGGGAATACCCGCAAAATAGAGAGAGAAATGGCGGAATCAGCAGTTGACTTTTTGCTTCAAAGCATCAAGGACCTGGTGGTATACAACTCCCGTTTAATGCAAGACAAGAAGGGCGAAATCGAGATTCTGGAGA...

CDS

1 records

下载 CDS FASTA

LOC130991771
ATGGCGGAATCAGCAGTTGACTTTTTGCTTCAAAGCATCAAGGACCTGGTGGTATACAACTCCCGTTTAATGCAAGACAAGAAGGGCGAAATCGAGATTCTGGAGACGGATCTCCGCTTGTTGAGAGCGTTCCTGAGGGACACCTTGAAGAATCGGAAAAAGAATGAGCGTATAAACCATTTGGTGAGGAAGATTCAAGACGTTGTTTACGAGGCCGAAAATATCATTGACGCCTTTGTTACCAGCGCCGCCGTCGAGAA...

Protein

1 records

下载 Protein FASTA

XP_057772146.1
MAESAVDFLLQSIKDLVVYNSRLMQDKKGEIEILETDLRLLRAFLRDTLKNRKKNERINHLVRKIQDVVYEAENIIDAFVTSAAVEKNPKSYSGNAADLLAIGPEVEWIMNQVKLWTTDSRISTVDDSDSHRRLEPRLPREENVVGFADVTEDLIRRLTRETNYFDVISVIGMFGLGKTTLACKVYNDEKIQYFFPRRIWLSISQDFSARDIFLDILKQLTTISDRILAKNDHELAYVVAGLLEGRKFLIVMDDVWETAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器