Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000711`

染色体: Chr07 坐标: 4950344-4956140 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000711`
名称	SmilChr07G000711
描述	disease resistance protein RGA2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4950344 - 4956140 / `+`

ID 对照

NCBI Gene ID	`LOC130991764`
GeneID	`130991764`
locus_tag	`-`
NCBI Name	`LOC130991764`
原始查询	`SmilChr07G000711`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RGA2-like
产物	disease resistance protein RGA2-like
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=28.9; qcov=0.915; evalue=2.46e-98; confidence=low
Rice	`Os08g0543100` - identity=29.5; qcov=1.04; evalue=1.01e-104; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130991764

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057772128.1`
2	Cytosol	细胞质基质	0.40000	`XP_057772128.1`
3	Nucleus	细胞核	0.00000	`XP_057772128.1`
4	Chromosome	染色体	0.00000	`XP_057772128.1`
5	Centromere	着丝粒	0.00000	`XP_057772128.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4951998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:4952045`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:4952054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:4952074`	`CCA`	`C`	2bp_deletion	frameshift_variant	1	B91
`Chr7:4952074`	`CCA`	`C`	2bp_deletion	CDS_variant	1	B91
`Chr7:4952098`	`TGA`	`T`	2bp_deletion	frameshift_variant	3	B105,B2,B40
`Chr7:4952098`	`TGA`	`T`	2bp_deletion	CDS_variant	3	B105,B2,B40
`Chr7:4952102`	`G`	`GAA`	2bp_insertion	frameshift_variant	2	B105,B2
`Chr7:4952102`	`G`	`GAA`	2bp_insertion	CDS_variant	2	B105,B2
`Chr7:4952115`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr7:4952124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B69,B91
`Chr7:4952152`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B69,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772128.1

1136 aa

568

1136

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

LRR_R13L1-DRL21

PF18052 Rx_N 9-93 aa PF00931 NB-ARC 169-348 aa PF23559 WHD_DRP 425-496 aa PF23598 LRR_14 529-824 aa PF25019 LRR_R13L1-DRL21 651-794 aa PF23247 LRR_RPS2 823-953 aa PF25019 LRR_R13L1-DRL21 1052-1111 aa

XP_057772129.1

1136 aa

568

1136

Rx_N

NB-ARC

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

LRR_R13L1-DRL21

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772128.1`	Pfam	`PF18052`	Rx_N	Domain	9	93	1.9e-17	63.9	Rx N-terminal domain
`XP_057772128.1`	Pfam	`PF00931`	NB-ARC	Domain	169	348	5e-28	98.5	NB-ARC domain
`XP_057772128.1`	Pfam	`PF23559`	WHD_DRP	Domain	425	496	3.6e-25	88.5	Disease resistance protein Winged helix domain
`XP_057772128.1`	Pfam	`PF23598`	LRR_14	Repeat	529	824	6.3e-47	160.8	Leucine-rich repeat region
`XP_057772128.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	651	794	1.1e-49	168.2	R13L1/DRL21 LRRs
`XP_057772128.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	823	953	2e-12	48.0	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057772128.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1052	1111	1.1e-49	168.2	R13L1/DRL21 LRRs
`XP_057772129.1`	Pfam	`PF18052`	Rx_N	Domain	9	93	1.9e-17	63.9	Rx N-terminal domain
`XP_057772129.1`	Pfam	`PF00931`	NB-ARC	Domain	169	348	5e-28	98.5	NB-ARC domain
`XP_057772129.1`	Pfam	`PF23559`	WHD_DRP	Domain	425	496	3.6e-25	88.5	Disease resistance protein Winged helix domain
`XP_057772129.1`	Pfam	`PF23598`	LRR_14	Repeat	529	824	6.3e-47	160.8	Leucine-rich repeat region
`XP_057772129.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	651	794	1.1e-49	168.2	R13L1/DRL21 LRRs
`XP_057772129.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	823	953	2e-12	48.0	Plant disease resistance protein RPS2-like, leucine-rich repeats
`XP_057772129.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	1052	1111	1.1e-49	168.2	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916145.1
CGCCCAAACCAAGATTAGAAAAAGAGAAACAGATCTGGAGATGAGGAGAAGGATGAAAGCAGACTCACTAACACAACACAAAATGGTGAAAGCAGATCCTCGTTGACAGTCATATCCTTCAATTGGCGCTACAATCCCGCTTCATTTCTACCTGTAACTAGAAATCATGGATGGAGGTACGTCTTGTGCGGTCATTGAAATCTTGGTTCAAAAACTGATGAAGACTTTCAAGGAAGAGTTGTCTCTGATACGAGGTGTGG...

XM_057916146.1
CGCCCAAACCAAGATTAGAAAAAGAGAAACAGATCTGGAGATGAGGAGAAGGATGAAAGCAGACTCACTAACACAACACAAAATGGTGAAAGCAGATCCTCGTTGACAGTCATATCCTTCAATTGGCGCTACAATCCCGCTTCATTTCTACCTGTAACTAGAAATCATGGATGGAGGTACGTCTTGTGCGGTCATTGAAATCTTGGTTCAAAAACTGATGAAGACTTTCAAGGAAGAGTTGTCTCTGATACGAGGTGTGG...

CDS

2 records

下载 CDS FASTA

LOC130991764
ATGGATGGAGGTACGTCTTGTGCGGTCATTGAAATCTTGGTTCAAAAACTGATGAAGACTTTCAAGGAAGAGTTGTCTCTGATACGAGGTGTGGATGAAGATGCCCAACAGCTGCAGATGACTTTGGTGATGATTCAGGGCTACTTGAACAATGCCCAGAACTACTCCACCAAAGACGATGTCAAGACCTGGTTGAGGGAGCTTGAAGCTGTGGCTTTCGGCGCTGATGATGTTTTGGACGAACTCAGCTATCATCTTCT...

Protein

2 records

下载 Protein FASTA

XP_057772128.1
MDGGTSCAVIEILVQKLMKTFKEELSLIRGVDEDAQQLQMTLVMIQGYLNNAQNYSTKDDVKTWLRELEAVAFGADDVLDELSYHLLHNKVNKMKTLVDKDKVLSSLNHIGRPRNTAPKIKQINTPFDSMNKKAIGSGLESVVVNAPAPAATFDTDSFNCDSIFIGRDDDVTMLVGNLIQIPQEQIFSILAIVGADGMGKTTLTRKVFNHENLKARFGLYIWVHVSRIFDPVMLFETILSMLTSETTDGVETEESILKKL...

XP_057772129.1
MDGGTSCAVIEILVQKLMKTFKEELSLIRGVDEDAQQLQMTLVMIQGYLNNAQNYSTKDDVKTWLRELEAVAFGADDVLDELSYHLLHNKVNKMKTLVDKDKVLSSLNHIGRPRNTAPKIKQINTPFDSMNKKAIGSGLESVVVNAPAPAATFDTDSFNCDSIFIGRDDDVTMLVGNLIQIPQEQIFSILAIVGADGMGKTTLTRKVFNHENLKARFGLYIWVHVSRIFDPVMLFETILSMLTSETTDGVETEESILKKL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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