当前解析结果
SmilChr07G000713| 统一新 Gene ID | SmilChr07G000713 |
|---|---|
| 名称 | SmilChr07G000713 |
| 描述 | pectinesterase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4966086 - 4968391 / + |
| NCBI Gene ID | LOC130991804 |
|---|---|
| GeneID | 130991804 |
| locus_tag | - |
| NCBI Name | LOC130991804 |
| 原始查询 | SmilChr07G000713 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectinesterase-like |
| 产物 | pectinesterase-like |
| Arabidopsis | AT5G49180 (AT5G49180)Plant invertase/pectin methylesterase inhibitor superfamily [Source:NCBI gene (formerly Entrezgene);Acc:834977] identity=44.7; qcov=0.947; evalue=1.17e-163; confidence=medium |
| Rice | Os03g0300500 (OsPME10)- identity=41.1; qcov=0.957; evalue=1.05e-144; confidence=medium |
| GO | GO:0030599 (pectinesterase activity); GO:0042545 (cell wall modification); GO:0046910 (pectinesterase inhibitor activity) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01095 (Pectinesterase); PF04043 (PMEI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991804 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.80000 | XP_057772192.1 |
| 2 | Cell wall | 细胞壁 | 0.60000 | XP_057772192.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772192.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772192.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772192.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4966251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:4966261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:4966263 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:4966287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:4966309 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B91 |
Chr7:4966309 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B91 |
Chr7:4966311 |
GCT |
G |
2bp_deletion | frameshift_variant | 1 | B91 |
Chr7:4966311 |
GCT |
G |
2bp_deletion | CDS_variant | 1 | B91 |
Chr7:4966315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B81 |
Chr7:4966328 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:4966433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:4966536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772192.1PF04043
PMEI 44-189 aa
PF01095
Pectinesterase 248-539 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772192.1 |
Pfam | PF04043 |
PMEI | Domain | 44 | 189 | 1.6e-25 | 90.8 | Plant invertase/pectin methylesterase inhibitor |
XP_057772192.1 |
Pfam | PF01095 |
Pectinesterase | Repeat | 248 | 539 | 5.8e-125 | 416.7 | Pectinesterase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。