当前解析结果
SmilChr07G000718| 统一新 Gene ID | SmilChr07G000718 |
|---|---|
| 名称 | SmilChr07G000718 |
| 描述 | MYB-like transcription factor EOBII |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4994990 - 4997102 / - |
| NCBI Gene ID | LOC130991893 |
|---|---|
| GeneID | 130991893 |
| locus_tag | - |
| NCBI Name | LOC130991893 |
| 原始查询 | SmilChr07G000718 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | MYB-like transcription factor EOBII |
| 产物 | MYB-like transcription factor EOBII |
| Arabidopsis | AT4G13480 (MYB79)myb domain protein 79 [Source:NCBI gene (formerly Entrezgene);Acc:826980] identity=55.4; qcov=0.981; evalue=3.44e-87; confidence=high |
| Rice | Os02g0618400 (OsMPS)- identity=56.5; qcov=0.815; evalue=3.26e-70; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991893 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772325.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772325.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772325.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772325.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772325.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4995078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:4995217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B27,B60,C3,C46 |
Chr7:4995267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C9,D7 |
Chr7:4995323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr7:4995336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr7:4995375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr7:4995424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B58,C18,C41 |
Chr7:4996220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B17 |
Chr7:4996957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B35,C37 |
Chr7:4996968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr7:4996969 |
CAT |
C |
2bp_deletion | frameshift_variant | 1 | C26 |
Chr7:4996969 |
CAT |
C |
2bp_deletion | CDS_variant | 1 | C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772325.1PF00249
Myb_DNA-binding 50-97 aa
PF13921
Myb_DNA-bind_6 53-110 aa
PF00249
Myb_DNA-binding 103-147 aa
PF13921
Myb_DNA-bind_6 107-155 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772325.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 50 | 97 | 5.3e-35 | 120.0 | Myb-like DNA-binding domain |
XP_057772325.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 53 | 110 | 1.2e-21 | 77.4 | Myb-like DNA-binding domain |
XP_057772325.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 103 | 147 | 5.3e-35 | 120.0 | Myb-like DNA-binding domain |
XP_057772325.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 107 | 155 | 1.2e-21 | 77.4 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。