Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000725`

染色体: Chr07 坐标: 5043385-5045536 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000725`
名称	SmilChr07G000725
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5043385 - 5045536 / `-`

ID 对照

NCBI Gene ID	`LOC130991797`
GeneID	`130991797`
locus_tag	`-`
NCBI Name	`LOC130991797`
原始查询	`SmilChr07G000725`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=35.1; qcov=0.883; evalue=1.34e-117; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=32.8; qcov=0.88; evalue=1.75e-85; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130991797

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057772184.1`
2	Chloroplast	叶绿体	0.20000	`XP_057772184.1`
3	Nucleus	细胞核	0.00000	`XP_057772184.1`
4	Chromosome	染色体	0.00000	`XP_057772184.1`
5	Centromere	着丝粒	0.00000	`XP_057772184.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5043947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,C38,C51
`Chr7:5044061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:5044076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B2,B27,C46,C8
`Chr7:5044126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr7:5044260`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B57,B91,C55
`Chr7:5044280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B38,B39,B5,C17,C52
`Chr7:5044455`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,C38,C51
`Chr7:5044457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B64,B75,B93
`Chr7:5044465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B81,D11
`Chr7:5044623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:5044642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:5044658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772184.1

590 aa

295

590

PPR_3

PPR_2

PPR

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

TPR_24

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR_2

PPR

PF13812 PPR_3 44-101 aa PF13041 PPR_2 54-103 aa PF01535 PPR 58-86 aa PF01535 PPR 92-114 aa PF01535 PPR 128-153 aa PF23276 TPR_24 174-288 aa PF12854 PPR_1 192-223 aa PF13041 PPR_2 196-244 aa PF01535 PPR 199-228 aa PF13812 PPR_3 219-277 aa PF12854 PPR_1 226-258 aa PF01535 PPR 233-261 aa PF12854 PPR_1 266-293 aa PF13041 PPR_2 266-313 aa PF01535 PPR 269-298 aa PF13812 PPR_3 289-349 aa PF12854 PPR_1 297-326 aa PF01535 PPR 303-331 aa PF13041 PPR_2 304-349 aa PF23276 TPR_24 317-429 aa PF12854 PPR_1 332-360 aa PF13041 PPR_2 335-382 aa PF01535 PPR 339-368 aa PF17177 PPR_long 351-485 aa PF13812 PPR_3 359-415 aa PF12854 PPR_1 367-399 aa PF13041 PPR_2 372-417 aa PF01535 PPR 374-402 aa PF12854 PPR_1 402-434 aa PF01535 PPR 408-438 aa PF13041 PPR_2 421-454 aa PF13812 PPR_3 429-486 aa PF12854 PPR_1 436-467 aa PF13041 PPR_2 441-488 aa PF01535 PPR 443-473 aa PF23276 TPR_24 454-548 aa PF12854 PPR_1 471-504 aa PF13041 PPR_2 475-523 aa PF01535 PPR 478-508 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772184.1`	Pfam	`PF13812`	PPR_3	Repeat	44	101	5.5e-57	190.5	Pentatricopeptide repeat domain
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	54	103	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	58	86	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	92	114	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	128	153	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF23276`	TPR_24	Repeat	174	288	3e-33	115.2	Pentatricopeptide repeat-containing protein
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	192	223	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	196	244	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	199	228	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF13812`	PPR_3	Repeat	219	277	5.5e-57	190.5	Pentatricopeptide repeat domain
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	226	258	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	233	261	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	266	293	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	266	313	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	269	298	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF13812`	PPR_3	Repeat	289	349	5.5e-57	190.5	Pentatricopeptide repeat domain
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	297	326	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	303	331	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	304	349	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF23276`	TPR_24	Repeat	317	429	3e-33	115.2	Pentatricopeptide repeat-containing protein
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	332	360	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	335	382	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	339	368	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF17177`	PPR_long	Repeat	351	485	1e-24	87.8	Pentacotripeptide-repeat region of PRORP
`XP_057772184.1`	Pfam	`PF13812`	PPR_3	Repeat	359	415	5.5e-57	190.5	Pentatricopeptide repeat domain
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	367	399	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	372	417	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	374	402	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	402	434	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	408	438	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	421	454	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF13812`	PPR_3	Repeat	429	486	5.5e-57	190.5	Pentatricopeptide repeat domain
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	436	467	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	441	488	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	443	473	5.6e-89	287.1	PPR repeat
`XP_057772184.1`	Pfam	`PF23276`	TPR_24	Repeat	454	548	3e-33	115.2	Pentatricopeptide repeat-containing protein
`XP_057772184.1`	Pfam	`PF12854`	PPR_1	Repeat	471	504	1.9e-109	357.7	PPR repeat
`XP_057772184.1`	Pfam	`PF13041`	PPR_2	Repeat	475	523	1e-130	426.5	PPR repeat family
`XP_057772184.1`	Pfam	`PF01535`	PPR	Repeat	478	508	5.6e-89	287.1	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916201.1
ATTGGAGGGAAATCTTTTTTTAGCACTAATAGAATATAAACCCACACATGAGTAGTGTCTGCAACAGTCTTTTAAGCTACATGAAATCTGGACGATTGATGCTGCCAAATGAATTCATACTAAAATATTTCATCTCAATTTAGGAAACAATTGTCTCTAATCTATCAAAAATCTTTGAGGAAAGATGGCGGCTTCCGCAAAAGCTCTAATTCCTCGGCTAATGGCGCGTAAACCGGGTACACACGCTCATCCAAGCTCTC...

CDS

1 records

下载 CDS FASTA

LOC130991797
ATGGCGGCTTCCGCAAAAGCTCTAATTCCTCGGCTAATGGCGCGTAAACCGGGTACACACGCTCATCCAAGCTCTCTCGATTTCCCAGATTTCAGCCGTATACACGACGCAGATGATGCTATTTCCTTGTTTCGTGAAATGATTATCGTTAGTCCGCATCCCTCTCATACTGTATTCAACAAATTGCTGTCCGTTACCTTCAAGATGGGAAATCACAGGCTTGCCCTCTACATGCTCGACGAAATGCGCCGGCGAGGCGC...

Protein

1 records

下载 Protein FASTA

XP_057772184.1
MAASAKALIPRLMARKPGTHAHPSSLDFPDFSRIHDADDAISLFREMIIVSPHPSHTVFNKLLSVTFKMGNHRLALYMLDEMRRRGAPMNNYTFNIAINCCCRLKRVDLGFVILGSLFTLGYKPNIATFTTLMRGLFGDGETVEAEKLFGKVLAHNLCEPNDVMIASLINGLNKAGMAHAACYYLEVLAKLGCNVNVHAYKSVIECLCGGGMVDDAMQLWRDMIDRGVLPDAVTYTSMVHGLCRGGRWEEMRKLICEMDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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