Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000735`

染色体: Chr07 坐标: 5115072-5117995 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000735`
名称	SmilChr07G000735
描述	uncharacterized SmilChr07G000735
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5115072 - 5117995 / `-`

ID 对照

NCBI Gene ID	`LOC130991874`
GeneID	`130991874`
locus_tag	`-`
NCBI Name	`LOC130991874`
原始查询	`SmilChr07G000735`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Sec20 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822020]; symbol=AtSec20; hit=AT3G24315; species=arabidopsis; confidence=high
产物	Sec20 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822020]; symbol=AtSec20; hit=AT3G24315; species=arabidopsis; confidence=high
Arabidopsis	`AT3G24315` (AtSec20) Sec20 family protein [Source:NCBI gene (formerly Entrezgene);Acc:822020] identity=64.2; qcov=0.895; evalue=5.76e-131; confidence=high
Rice	`Os02g0658900` - identity=63.5; qcov=0.796; evalue=2.27e-113; confidence=high
GO	GO:0005484 (SNAP receptor activity); GO:0005783 (endoplasmic reticulum); GO:0006890 (retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum); GO:0031201 (SNARE complex)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF03908 (Sec20)
InterPro	-
eggNOG	-
NR	GeneID:130991874

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057772293.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057772293.1`
3	Nucleus	细胞核	0.00000	`XP_057772293.1`
4	Chromosome	染色体	0.00000	`XP_057772293.1`
5	Centromere	着丝粒	0.00000	`XP_057772293.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5115240`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C17
`Chr7:5115240`	`C`	`CA`	1bp_insertion	CDS_variant	1	C17
`Chr7:5115521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr7:5116876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:5117116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr7:5117729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr7:5117818`	`G`	`GA`	1bp_insertion	frameshift_variant	44	A1,A14,A16,A19,A21,A24,A25,A3,B101,B104,B115,B119,B125,B138,B15,B20,B24,B28,B31,B33,B35,B42,B43,B49,B51,B53,B66,B67,B71,B79,B85,B86,B94,B95,C10,C33,C34,C36,C37,C40,C43,C61,C65,C76
`Chr7:5117823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:5117837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr7:5117873`	`A`	`ATG`	2bp_insertion	frameshift_variant	57	A10,A13,A14,A15,A18,A2,A20,A21,B1,B103,B106,B107,B108,B112,B122,B123,B124,B126,B131,B133,B134,B137,B16,B25,B28,B29,B37,B45,B5,B56,B67,B7,B70,B74,B79,B83,B86,B9,B94,B95,B96,B99,C12,C15,C16,C20,C28,C29,C47,C50,C57,C59,C61,C62,C82,C84,C86
`Chr7:5117876`	`T`	`TAC`	2bp_insertion	frameshift_variant	7	B104,B120,B19,B26,B91,C52,D6
`Chr7:5117917`	`G`	`A`	EMS_canonical_SNV	stop_gained	8	A8,B126,B22,B23,B46,C87,D4,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772293.1

334 aa

167

334

Sec20

PF03908 Sec20 192-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772293.1`	Pfam	`PF03908`	Sec20	Domain	192	283	1.4e-27	96.2	Sec20

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916310.1
TTGAGTTCGACCCCTCTGGCTCCAAGTTACCCAAAAGCCCGAACCCGACCGAAAGCTACTAGCGATATGGCCCGAACCCGAATACAATCTCTTCAGTTGTTCTTTCAAGTTTCAAAACTACATTTTTGCAAATCTTGCATCAAAACTCAAAACGCCTCCGATATTGTTCAGACATTTCAAGTTCAGATGGATAAAGTAGCAGAAGAAGTGGATAAAGTCAAGAAAGATTTTCAAGATACATTTGATCAAACCCTAAAACA...

CDS

1 records

下载 CDS FASTA

LOC130991874
ATGGCCCGAACCCGAATACAATCTCTTCAGTTGTTCTTTCAAGTTTCAAAACTACATTTTTGCAAATCTTGCATCAAAACTCAAAACGCCTCCGATATTGTTCAGACATTTCAAGTTCAGATGGATAAAGTAGCAGAAGAAGTGGATAAAGTCAAGAAAGATTTTCAAGATACATTTGATCAAACCCTAAAACACATCGACTCAATCCAAGAATACGGAAAAACATCGCGAATTTCGAAGCAAAGTGAAATTGAAGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057772293.1
MARTRIQSLQLFFQVSKLHFCKSCIKTQNASDIVQTFQVQMDKVAEEVDKVKKDFQDTFDQTLKHIDSIQEYGKTSRISKQSEIEEAEKKDSLPRLNGLAQDGLNMLQSLQFNLDLLAPQLPSADDVEKAQSLAQSWKKQIQSLRLSLRNANLQAKANMKKAAQQERELLLGGGEESTARRRNLQTKAGMTSAAESITESLRRTRQLMVQEVERSASTIMTFEESTGVLKKAESEYKGHRSLFSRTRGLLSTMQRQDVLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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