当前解析结果
SmilChr07G000737| 统一新 Gene ID | SmilChr07G000737 |
|---|---|
| 名称 | SmilChr07G000737 |
| 描述 | disease resistance protein RGA2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5130726 - 5135873 / - |
| NCBI Gene ID | LOC130991766 |
|---|---|
| GeneID | 130991766 |
| locus_tag | - |
| NCBI Name | LOC130991766 |
| 原始查询 | SmilChr07G000737 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RGA2-like |
| 产物 | disease resistance protein RGA2-like |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=31.4; qcov=0.888; evalue=2.57e-112; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=31.1; qcov=0.879; evalue=1.13e-121; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991766 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772133.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772133.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772133.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772133.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772133.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5130977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B85,C65 |
Chr7:5130980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B85,B89,C65 |
Chr7:5132308 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 2 | B129,B17 |
Chr7:5132308 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B129,B17 |
Chr7:5132317 |
A |
ATT |
2bp_insertion | frameshift_variant | 26 | A10,B109,B129,B135,B137,B17,B18,B23,B41,B42,B43,B59,B60,B63,B78,B81,B83,B97,C1,C10,C18,C4,C42,C56,C64,C66 |
Chr7:5132361 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B44 |
Chr7:5132361 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B44 |
Chr7:5132392 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C60,C78 |
Chr7:5132414 |
T |
TA |
1bp_insertion | frameshift_variant | 4 | B26,B65,B93,D1 |
Chr7:5132414 |
T |
TA |
1bp_insertion | CDS_variant | 4 | B26,B65,B93,D1 |
Chr7:5132420 |
A |
ATT |
2bp_insertion | frameshift_variant | 70 | A1,A16,A20,A24,A25,A4,A5,A7,B101,B11,B110,B111,B119,B121,B124,B138,B140,B18,B19,B2,B21,B22,B30,B36,B38,B4,B41,B42,B46,B53,B57,B61,B64,B68,B71,B75,B76,B78,B87,B88,B90,B93,B95,B98,C15,C21,C24,C29,C30,C32,C33,C34,C35,C36,C37,C39,C46,C47,C48,C58,C64,C68,C75,C8,C80,C82,C84,C86,D10,D2 |
Chr7:5132423 |
A |
AAC |
2bp_insertion | frameshift_variant | 42 | A10,A13,A14,A18,B10,B103,B118,B126,B129,B133,B15,B35,B44,B45,B49,B51,B59,B63,B66,B67,B82,B84,B86,B94,C1,C10,C12,C2,C26,C3,C41,C42,C54,C6,C67,C69,C71,C74,C76,C78,C9,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772133.1PF18052
Rx_N 35-120 aa
PF00931
NB-ARC 200-374 aa
PF23559
WHD_DRP 456-527 aa
PF23598
LRR_14 557-841 aa
PF25019
LRR_R13L1-DRL21 685-821 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772133.1 |
Pfam | PF18052 |
Rx_N | Domain | 35 | 120 | 9e-21 | 74.5 | Rx N-terminal domain |
XP_057772133.1 |
Pfam | PF00931 |
NB-ARC | Domain | 200 | 374 | 9.3e-35 | 120.5 | NB-ARC domain |
XP_057772133.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 456 | 527 | 7.5e-25 | 87.5 | Disease resistance protein Winged helix domain |
XP_057772133.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 557 | 841 | 2.3e-35 | 122.7 | Leucine-rich repeat region |
XP_057772133.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 685 | 821 | 2.8e-47 | 160.5 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。