Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000749`

染色体: Chr07 坐标: 5271788-5276252 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000749`
名称	SmilChr07G000749
描述	uncharacterized SmilChr07G000749
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5271788 - 5276252 / `-`

ID 对照

NCBI Gene ID	`LOC130991865`
GeneID	`130991865`
locus_tag	`-`
NCBI Name	`LOC130991865`
原始查询	`SmilChr07G000749`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976]; symbol=AT4G13440; hit=AT4G13440; species=arabidopsis; confidence=low
产物	Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976]; symbol=AT4G13440; hit=AT4G13440; species=arabidopsis; confidence=low
Arabidopsis	`AT4G13440` (AT4G13440) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976] identity=39.2; qcov=0.424; evalue=4.8e-29; confidence=low
Rice	`-` -
GO	GO:0001735 (prenylcysteine oxidase activity); GO:0005509 (calcium ion binding); GO:0030327 (prenylated protein catabolic process); GO:0030328 (prenylcysteine catabolic process)
KEGG	-
Pfam	PF07156 (Prenylcys_lyase); PF13499 (EF-hand_7)
InterPro	-
eggNOG	-
NR	GeneID:130991865

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057772268.1`
2	Cytosol	细胞质基质	0.20000	`XP_057772268.1`
3	Vacuole	液泡	0.20000	`XP_057772268.1`
4	Nucleus	细胞核	0.00000	`XP_057772268.1`
5	Chromosome	染色体	0.00000	`XP_057772268.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5271910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,D6
`Chr7:5271927`	`T`	`TGC`	2bp_insertion	frameshift_variant	2	B3,D6
`Chr7:5271927`	`T`	`TGC`	2bp_insertion	CDS_variant	2	B3,D6
`Chr7:5271928`	`T`	`TC`	1bp_insertion	frameshift_variant	2	B3,D6
`Chr7:5271928`	`T`	`TC`	1bp_insertion	CDS_variant	2	B3,D6
`Chr7:5272072`	`T`	`TAC`	2bp_insertion	frameshift_variant	2	A5,B129
`Chr7:5272072`	`T`	`TAC`	2bp_insertion	CDS_variant	2	A5,B129
`Chr7:5272087`	`ATT`	`A`	2bp_deletion	frameshift_variant	2	A5,B129
`Chr7:5272087`	`ATT`	`A`	2bp_deletion	CDS_variant	2	A5,B129
`Chr7:5272105`	`T`	`TGC`	2bp_insertion	frameshift_variant	13	B110,B13,B18,B31,B60,B66,B74,C24,C35,C43,C48,C51,C83
`Chr7:5272108`	`G`	`GTA`	2bp_insertion	frameshift_variant	10	A21,B127,B42,B43,B5,B51,C33,C40,C75,D4
`Chr7:5272111`	`TTG`	`T`	2bp_deletion	frameshift_variant	23	A21,B110,B127,B13,B18,B31,B42,B43,B5,B51,B60,B66,B74,C24,C33,C35,C40,C43,C48,C51,C75,C83,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772268.1

361 aa

180

361

EF-hand_7

Prenylcys_lyase

PF13499 EF-hand_7 104-166 aa PF07156 Prenylcys_lyase 252-319 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772268.1`	Pfam	`PF13499`	EF-hand_7	Domain	104	166	1.1e-09	39.1	EF-hand domain pair
`XP_057772268.1`	Pfam	`PF07156`	Prenylcys_lyase	Family	252	319	4.7e-11	43.0	Prenylcysteine lyase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916285.1
TAGTAGATTTTTCTTCATCACACACTGATTTAGAGAGAGAAACGGAGAGATAATCTAGAGAGAGAGAAATGGAAGGGATGAGGGAGATCGCGAGATCCTACTACGAGAGAGCGAGCGACGCCGCGAAGATTTCGATCGAAGAATCCTTCGCGAAACTCGACGTGGACGGCGACGGGAAGATATGCCTGGCGGAGTTCAAGAAATCGGTGAGCTCGTGGCTGCGCGCGGAGGCCGTGTTCGAGAAACTCGACGAGGACGGC...

CDS

1 records

下载 CDS FASTA

LOC130991865
ATGGAGAAGAAGGTGGAATTAAACAAATGCAGCGTCTGCCATGAGCTGCTGGTGGGCCCCTACTTCTCTTGCTTGCTATGCATAGGAAGACGTCCCGACTCCTACGACCTCTGCTGCTCTTGTTACCGCCGCCACGACGCTTTGCCCGAGCATGAGCACTCCGATCACTACATGATGGATCCTCACTCTCTGCTCATGGAGTTCAGAAGTCGCACCGCTGCTGCTGACACGTCTCAAAACAAGAATGACATAGAAGAACT...

Protein

1 records

下载 Protein FASTA

XP_057772268.1
MEKKVELNKCSVCHELLVGPYFSCLLCIGRRPDSYDLCCSCYRRHDALPEHEHSDHYMMDPHSLLMEFRSRTAAADTSQNKNDIEELREIAKAYYRAASKEVKDRAREFYQSMDSDGNGRVDCSEFLDFMSQTSNPSSMQKRKLFSALDLDNNGTLDFFEVMTLYYIIKSGRPLCDGDGCGRFILGIFFSCVECFKNSKTSFDLCPDCYRAARYDHNHDGQAQFLDNYALLQVMRDPTLTRESGVNLNEVNTYGQSVNIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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