当前解析结果
SmilChr07G000750| 统一新 Gene ID | SmilChr07G000750 |
|---|---|
| 名称 | SmilChr07G000750 |
| 描述 | uncharacterized SmilChr07G000750 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5280137 - 5284002 / - |
| NCBI Gene ID | LOC130991855 |
|---|---|
| GeneID | 130991855 |
| locus_tag | - |
| NCBI Name | LOC130991855 |
| 原始查询 | SmilChr07G000750 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976]; symbol=AT4G13440; hit=AT4G13440; species=arabidopsis; confidence=medium |
| 产物 | Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976]; symbol=AT4G13440; hit=AT4G13440; species=arabidopsis; confidence=medium |
| Arabidopsis | AT4G13440 (AT4G13440)Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:826976] identity=39.8; qcov=0.514; evalue=3.12e-32; confidence=medium |
| Rice | -- |
| GO | GO:0005509 (calcium ion binding); GO:0005783 (endoplasmic reticulum) |
| KEGG | - |
| Pfam | PF13202 (EF-hand_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991855 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057772254.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057772252.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057772254.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057772252.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772252.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5280711 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B29 |
Chr7:5280711 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B29 |
Chr7:5280737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B57,B91,C12,C50 |
Chr7:5280765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B48,C2,C60 |
Chr7:5280781 |
ATT |
A |
2bp_deletion | frameshift_variant | 1 | C63 |
Chr7:5280781 |
ATT |
A |
2bp_deletion | CDS_variant | 1 | C63 |
Chr7:5281547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:5281567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:5281660 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr7:5281662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr7:5281678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C45 |
Chr7:5281713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772252.1PF13202
EF-hand_5 27-45 aa
PF13202
EF-hand_5 54-73 aa
PF13202
EF-hand_5 188-206 aa
PF13202
EF-hand_5 219-239 aa
XP_057772254.1PF13202
EF-hand_5 27-45 aa
PF13202
EF-hand_5 54-73 aa
PF13202
EF-hand_5 188-206 aa
PF13202
EF-hand_5 219-239 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772252.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 27 | 45 | 3.7e-17 | 61.6 | EF hand |
XP_057772252.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 54 | 73 | 3.7e-17 | 61.6 | EF hand |
XP_057772252.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 188 | 206 | 3.7e-17 | 61.6 | EF hand |
XP_057772252.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 219 | 239 | 3.7e-17 | 61.6 | EF hand |
XP_057772254.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 27 | 45 | 2.7e-17 | 62.1 | EF hand |
XP_057772254.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 54 | 73 | 2.7e-17 | 62.1 | EF hand |
XP_057772254.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 188 | 206 | 2.7e-17 | 62.1 | EF hand |
XP_057772254.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 219 | 239 | 2.7e-17 | 62.1 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。