Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000751`

染色体: Chr07 坐标: 5285295-5291427 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000751`
名称	SmilChr07G000751
描述	3-isopropylmalate dehydratase large subunit, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5285295 - 5291427 / `+`

ID 对照

NCBI Gene ID	`LOC130991828`
GeneID	`130991828`
locus_tag	`-`
NCBI Name	`LOC130991828`
原始查询	`SmilChr07G000751`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-isopropylmalate dehydratase large subunit, chloroplastic-like
产物	3-isopropylmalate dehydratase large subunit%2C chloroplastic-like
Arabidopsis	`AT4G13430` (IIL1) isopropyl malate isomerase large subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:826975] identity=81.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0125100` - identity=80.9; qcov=1.01; evalue=0; confidence=high
GO	GO:0003861 (3-isopropylmalate dehydratase activity); GO:0008652 (amino acid biosynthetic process); GO:0051539 (4 iron, 4 sulfur cluster binding)
KEGG	smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00660 (C5-Branched dibasic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00966 (Glucosinolate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00330 (Aconitase)
InterPro	-
eggNOG	-
NR	GeneID:130991828

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772219.1`
2	Mitochondrion	线粒体	0.40000	`XP_057772219.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057772219.1`
4	Nucleus	细胞核	0.00000	`XP_057772219.1`
5	Chromosome	染色体	0.00000	`XP_057772219.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5285554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:5285561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,C38,C51
`Chr7:5285571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:5285783`	`A`	`AG`	1bp_insertion	frameshift_variant	67	A16,A2,A21,A22,B103,B108,B110,B112,B118,B119,B121,B122,B128,B13,B130,B131,B133,B14,B15,B2,B21,B22,B27,B28,B29,B31,B32,B42,B45,B57,B59,B63,B64,B67,B71,B78,B80,B81,B87,B88,B91,B93,C2,C28,C29,C3,C31,C36,C4,C40,C47,C48,C49,C52,C53,C54,C56,C57,C60,C62,C70,C72,C81,C84,C85,D10,D9
`Chr7:5285840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B22,C47
`Chr7:5287621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr7:5287645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:5287820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:5288033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:5288555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:5288558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C63
`Chr7:5288752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772219.1

510 aa

255

510

Aconitase

PF00330 Aconitase 87-359 aa PF00330 Aconitase 363-500 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772219.1`	Pfam	`PF00330`	Aconitase	Family	87	359	1.2e-82	279.1	Aconitase family (aconitate hydratase)
`XP_057772219.1`	Pfam	`PF00330`	Aconitase	Family	363	500	1.2e-82	279.1	Aconitase family (aconitate hydratase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916236.1
GAAAATGAAATTGAACAATTCAAGTGAATTAGTAATTTATTTTGTGGAGCTGCACGTTTCCACTGTTCGAGCTGATTAACCATTTCTACTTCTATCAATTACTACCATTTTTAATTGTTGCGCAGCACAAGCAGCCGCCGCCACAGAAAAAACTGAAAAAAGAAAAGAAAAGAAAAAACTCGTAAATTAATAGGAAGAGATACACAAACTGTGTAATTCCTCTTGCTCAGACAACATCAGATGGCTTCATCTGCTGTAGC...

CDS

1 records

下载 CDS FASTA

LOC130991828
ATGGCTTCATCTGCTGTAGCTCCGACCTCCTCATTCCTCGTGGACAAGAAAGATGTGGGCTTTTCAGCTGTATGCACCCAACCTTCATTTCCATGTTCCGCGCAGCTCTCCAAGAGAAGGGTTTCGAGAAAAATAGTTTCTGTAATGGCGCCCCAGCAATCCGAGCGCAAACCGTCGACGACGGGGGCGGTTAAGACTGGGATGACCATGACTGAGAAGATATTGGCGAGAGCTTCGGAGAAATCCCAATTGGTTCCCGG...

Protein

1 records

下载 Protein FASTA

XP_057772219.1
MASSAVAPTSSFLVDKKDVGFSAVCTQPSFPCSAQLSKRRVSRKIVSVMAPQQSERKPSTTGAVKTGMTMTEKILARASEKSQLVPGENAWVNVDILMTHDVCGPGSIGIFKKEFGQNAKVWDREKVVIIPDHYIFTTDERANRNVDILRDFCNEQNIKYFYDIKDLGNFKANPDYKGVCHVALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLAKDLILQII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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