当前解析结果
SmilChr07G000753| 统一新 Gene ID | SmilChr07G000753 |
|---|---|
| 名称 | SmilChr07G000753 |
| 描述 | uncharacterized SmilChr07G000753 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5307067 - 5309792 / - |
| NCBI Gene ID | LOC130991838 |
|---|---|
| GeneID | 130991838 |
| locus_tag | - |
| NCBI Name | LOC130991838 |
| 原始查询 | SmilChr07G000753 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895]; symbol=AT2G33320; hit=AT2G33320; species=arabidopsis; confidence=medium |
| 产物 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895]; symbol=AT2G33320; hit=AT2G33320; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G33320 (AT2G33320)Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895] identity=37.5; qcov=1.21; evalue=1.05e-95; confidence=medium |
| Rice | Os02g0815100- identity=44.1; qcov=0.321; evalue=1.5e-26; confidence=low |
| GO | GO:0006952 (defense response) |
| KEGG | - |
| Pfam | PF00168 (C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991838 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772234.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772234.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772234.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772234.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772234.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5307482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:5307514 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A18,C11,C69 |
Chr7:5307514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,C11,C69 |
Chr7:5307546 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C54,C86 |
Chr7:5307635 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B48,C2,C60 |
Chr7:5307665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr7:5307677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B2,B37,B44,C46 |
Chr7:5307762 |
GCC |
G |
2bp_deletion | frameshift_variant | 57 | A15,A18,A19,A20,A3,A7,A9,B105,B108,B111,B12,B125,B133,B137,B16,B18,B24,B27,B28,B3,B30,B32,B38,B39,B4,B47,B50,B51,B55,B60,B74,B77,B98,B99,C11,C13,C2,C20,C25,C28,C31,C34,C4,C41,C46,C5,C54,C56,C63,C64,C69,C72,C73,C82,C83,C86,D8 |
Chr7:5307773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A1,B140,C37,C71 |
Chr7:5307909 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B96 |
Chr7:5307909 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B96 |
Chr7:5307919 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772234.1PF00168
C2 10-108 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772234.1 |
Pfam | PF00168 |
C2 | Domain | 10 | 108 | 2e-14 | 54.4 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。