当前解析结果
SmilChr07G000775| 统一新 Gene ID | SmilChr07G000775 |
|---|---|
| 名称 | SmilChr07G000775 |
| 描述 | transcription factor MYB59-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5424843 - 5426282 / - |
| NCBI Gene ID | LOC130991886 |
|---|---|
| GeneID | 130991886 |
| locus_tag | - |
| NCBI Name | LOC130991886 |
| 原始查询 | SmilChr07G000775 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB59-like |
| 产物 | transcription factor MYB59-like |
| Arabidopsis | AT3G46130 (MYB48)myb domain protein 48 [Source:NCBI gene (formerly Entrezgene);Acc:823756] identity=47.1; qcov=1.03; evalue=1.1e-63; confidence=high |
| Rice | Os11g0700500 (MYBAS1)- identity=41.1; qcov=0.955; evalue=3.31e-46; confidence=medium |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991886 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772314.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772314.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772314.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772314.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772314.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5425361 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:5425376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B27,B48,C2,C37,C60 |
Chr7:5425396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr7:5425406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr7:5425407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:5425549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C12,C50 |
Chr7:5425562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,B10,B65,D1 |
Chr7:5425574 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B49,B79,C36,C47 |
Chr7:5425604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,D8 |
Chr7:5425756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr7:5425757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C42,C46,C7 |
Chr7:5425775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772314.1PF00249
Myb_DNA-binding 10-57 aa
PF13921
Myb_DNA-bind_6 13-72 aa
PF00249
Myb_DNA-binding 63-107 aa
PF13921
Myb_DNA-bind_6 67-115 aa
XP_057772316.1PF00249
Myb_DNA-binding 42-86 aa
PF13921
Myb_DNA-bind_6 46-94 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772314.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 10 | 57 | 3.9e-33 | 114.0 | Myb-like DNA-binding domain |
XP_057772314.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 13 | 72 | 1.9e-16 | 60.7 | Myb-like DNA-binding domain |
XP_057772314.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 63 | 107 | 3.9e-33 | 114.0 | Myb-like DNA-binding domain |
XP_057772314.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 67 | 115 | 1.9e-16 | 60.7 | Myb-like DNA-binding domain |
XP_057772316.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 42 | 86 | 2.2e-21 | 76.4 | Myb-like DNA-binding domain |
XP_057772316.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 46 | 94 | 6.3e-10 | 39.8 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。