Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000779`

染色体: Chr07 坐标: 5480747-5484856 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000779`
名称	SmilChr07G000779
描述	ras-related protein RABE1c
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5480747 - 5484856 / `-`

ID 对照

NCBI Gene ID	`LOC130991895`
GeneID	`130991895`
locus_tag	`-`
NCBI Name	`LOC130991895`
原始查询	`SmilChr07G000779`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ras-related protein RABE1c
产物	ras-related protein RABE1c
Arabidopsis	`AT3G46060` (RABE1c) RAB GTPase homolog 8A [Source:NCBI gene (formerly Entrezgene);Acc:823749] identity=92.7; qcov=0.954; evalue=7.34e-143; confidence=high
Rice	`Os07g0239400` (OsRab8A3) - identity=91.8; qcov=0.954; evalue=1.48e-138; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005886 (plasma membrane); GO:0006904 (GO:0006904); GO:0009306 (protein secretion); GO:0017157 (regulation of exocytosis)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00009 (GTP_EFTU); PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130991895

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057772327.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057772327.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057772327.1`
4	Vesicle	囊泡	1.00000	`XP_057772327.1`
5	Endosome	内体	1.00000	`XP_057772327.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5481091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C83,D6
`Chr7:5481112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,D8
`Chr7:5481244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B80,D5
`Chr7:5481879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr7:5481882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr7:5482897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B80,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772327.1

216 aa

108

216

Arf

Roc

Ras

MMR_HSR1

GTP_EFTU

PF00025 Arf 16-147 aa PF08477 Roc 17-131 aa PF00071 Ras 17-178 aa PF01926 MMR_HSR1 18-129 aa PF00009 GTP_EFTU 49-173 aa

XP_057772328.1

216 aa

108

216

Arf

Roc

Ras

MMR_HSR1

GTP_EFTU

PF00025 Arf 16-147 aa PF08477 Roc 17-131 aa PF00071 Ras 17-178 aa PF01926 MMR_HSR1 18-129 aa PF00009 GTP_EFTU 49-173 aa

XP_057772329.1

216 aa

108

216

Arf

Roc

Ras

MMR_HSR1

GTP_EFTU

PF00025 Arf 16-147 aa PF08477 Roc 17-131 aa PF00071 Ras 17-178 aa PF01926 MMR_HSR1 18-129 aa PF00009 GTP_EFTU 49-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772327.1`	Pfam	`PF00025`	Arf	Domain	16	147	2.7e-15	57.0	ADP-ribosylation factor family
`XP_057772327.1`	Pfam	`PF08477`	Roc	Domain	17	131	4.4e-35	121.2	Ras of Complex, Roc, domain of DAPkinase
`XP_057772327.1`	Pfam	`PF00071`	Ras	Domain	17	178	2.8e-68	229.3	Ras family
`XP_057772327.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	129	1.4e-05	25.9	50S ribosome-binding GTPase
`XP_057772327.1`	Pfam	`PF00009`	GTP_EFTU	Domain	49	173	1.9e-07	31.5	Elongation factor Tu GTP binding domain
`XP_057772328.1`	Pfam	`PF00025`	Arf	Domain	16	147	2.7e-15	57.0	ADP-ribosylation factor family
`XP_057772328.1`	Pfam	`PF08477`	Roc	Domain	17	131	4.4e-35	121.2	Ras of Complex, Roc, domain of DAPkinase
`XP_057772328.1`	Pfam	`PF00071`	Ras	Domain	17	178	2.8e-68	229.3	Ras family
`XP_057772328.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	129	1.4e-05	25.9	50S ribosome-binding GTPase
`XP_057772328.1`	Pfam	`PF00009`	GTP_EFTU	Domain	49	173	1.9e-07	31.5	Elongation factor Tu GTP binding domain
`XP_057772329.1`	Pfam	`PF00025`	Arf	Domain	16	147	2.7e-15	57.0	ADP-ribosylation factor family
`XP_057772329.1`	Pfam	`PF08477`	Roc	Domain	17	131	4.4e-35	121.2	Ras of Complex, Roc, domain of DAPkinase
`XP_057772329.1`	Pfam	`PF00071`	Ras	Domain	17	178	2.8e-68	229.3	Ras family
`XP_057772329.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	129	1.4e-05	25.9	50S ribosome-binding GTPase
`XP_057772329.1`	Pfam	`PF00009`	GTP_EFTU	Domain	49	173	1.9e-07	31.5	Elongation factor Tu GTP binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057916346.1
CGTGCGCTCGCAGGCAGCCGATTGGTTTTGGTGTTTGTAATTTGGAAAATGTAAAAGCGTTTGTATTATAATACTATAATCTGGTACAGATATTATTAGATTACTCTCTAAGTGCACTCCAAACAAGATGCGCATATTAGCAACCATCGGACGGCGAACCTGTCAACTACTATCTGCGAGTAATTTGTGATCGGAACCTACTTGAGACCTGAGACTGAGCAGAGAGAAGCTGATTTTGGGGTATTCGTGAGGTTTGCAAT...

XM_057916345.1
CAGGCAGCCGATTGGTTTTGGTGTTTGTAATTTGGAAAATGTAAAAGCGTTTGTATTATAATACTATAATCTGGTACAGATATTATTAGATTACTCTCTAAGTGCACTCCAAACAAGATGCGCATATTAGCAACCATCGGACGGCGAACCTGTCAACTACTGTCTGTCTCCCAACTGATCTGCGAGTAATTTGTGATCGGAACCTACTTGAGACCTGAGACTGAGCAGAGAGAAGCTGATTTTGGGGTATTCGTGAGGTT...

CDS

3 records

下载 CDS FASTA

LOC130991895
ATGGCCGCACCACCGGCGAGGGCGAGGGCGGATTATGATTACCTCATCAAGCTTCTCCTCATCGGCGACAGCGGTGTGGGTAAGAGTTGTCTTCTTTTGCGATTCTCTGATGGTTCCTTCACAACTAGCTTCATCACCACCATTGGAATTGATTTTAAGATAAGAACCGTTGAGCTTGATGGAAAGCGGATCAAGCTTCAAATTTGGGACACAGCTGGACAAGAGCGATTCCGCACTATCACCACAGCTTATTATCGTGG...

Protein

3 records

下载 Protein FASTA

XP_057772327.1
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLSDTDTKAEPTTIKINQPDGSAGGGQLASKSACCGS

XP_057772328.1
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLSDTDTKAEPTTIKINQPDGSAGGGQLASKSACCGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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