当前解析结果
SmilChr07G000782| 统一新 Gene ID | SmilChr07G000782 |
|---|---|
| 名称 | SmilChr07G000782 |
| 描述 | ACT domain-containing protein ACR9 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5505225 - 5509187 / + |
| NCBI Gene ID | LOC130991849 |
|---|---|
| GeneID | 130991849 |
| locus_tag | - |
| NCBI Name | LOC130991849 |
| 原始查询 | SmilChr07G000782 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ACT domain-containing protein ACR9 |
| 产物 | ACT domain-containing protein ACR9 |
| Arabidopsis | AT2G39570 (ACR9)ACT domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818542] identity=57.7; qcov=0.995; evalue=3.55e-169; confidence=high |
| Rice | Os05g0113000- identity=58.1; qcov=0.915; evalue=1.1e-154; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF24914 (ACR10_N); PF24926 (ACT_ACR9_C); PF24931 (ACT_ACR9_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991849 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057772247.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057772247.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057772247.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772247.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5506257 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B127,C26,C6,C79 |
Chr7:5506301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr7:5506304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B26,B46,C27,C78 |
Chr7:5506313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:5506333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:5506353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr7:5506377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,B136,B4,B82 |
Chr7:5506411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr7:5506591 |
GA |
G |
1bp_deletion | frameshift_variant | 6 | A25,A9,B10,B65,D1,D9 |
Chr7:5507758 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B75 |
Chr7:5507795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B21,B55 |
Chr7:5507851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,A9,B10,B65,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772247.1PF24914
ACR10_N 16-94 aa
PF24931
ACT_ACR9_3rd 244-341 aa
PF24926
ACT_ACR9_C 342-424 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772247.1 |
Pfam | PF24914 |
ACR10_N | Domain | 16 | 94 | 1.6e-44 | 149.9 | ACT domain-containing protein ACR10, N-terminal |
XP_057772247.1 |
Pfam | PF24931 |
ACT_ACR9_3rd | Domain | 244 | 341 | 4.8e-59 | 197.2 | ACR9-like, ACT-like domain |
XP_057772247.1 |
Pfam | PF24926 |
ACT_ACR9_C | Domain | 342 | 424 | 2.6e-41 | 140.1 | ACT domain-containing protein ACR9, C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。