Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000790`

染色体: Chr07 坐标: 5576819-5579728 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000790`
名称	SmilChr07G000790
描述	putative E3 ubiquitin-protein ligase XBAT31
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5576819 - 5579728 / `+`

ID 对照

NCBI Gene ID	`LOC130991845`
GeneID	`130991845`
locus_tag	`-`
NCBI Name	`LOC130991845`
原始查询	`SmilChr07G000790`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase XBAT31
产物	putative E3 ubiquitin-protein ligase XBAT31
Arabidopsis	`AT2G28840` (XBAT31) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817433] identity=70.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os05g0112000` (XB3) - identity=67.3; qcov=1; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF24921 (RING_XB3-XBAT31)
InterPro	-
eggNOG	-
NR	GeneID:130991845

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057772241.1`
2	Cytosol	细胞质基质	0.60000	`XP_057772241.1`
3	Nucleus	细胞核	0.00000	`XP_057772241.1`
4	Chromosome	染色体	0.00000	`XP_057772241.1`
5	Centromere	着丝粒	0.00000	`XP_057772241.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5577225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C32
`Chr7:5577457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C83,D6
`Chr7:5577472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,C2,C37,C60
`Chr7:5577892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr7:5578076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B48,C2,C37,C60,C82
`Chr7:5578351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B140,B37,B82
`Chr7:5578650`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:5579077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr7:5579134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:5579155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772241.1

446 aa

223

446

Ank_2

Ank_4

Ank_3

Ank

Ank_3

Ank

Ank_4

Ank

Ank_2

Ank_3

Ank

Ank_4

Ank_3

Ank

Ank_2

RING_XB3-XBAT31

PF12796 Ank_2 15-106 aa PF13637 Ank_4 18-66 aa PF13606 Ank_3 46-73 aa PF00023 Ank 46-76 aa PF13606 Ank_3 79-106 aa PF00023 Ank 80-107 aa PF13637 Ank_4 85-130 aa PF00023 Ank 112-134 aa PF12796 Ank_2 112-184 aa PF13606 Ank_3 158-182 aa PF00023 Ank 158-187 aa PF13637 Ank_4 162-212 aa PF13606 Ank_3 195-220 aa PF00023 Ank 195-225 aa PF12796 Ank_2 195-247 aa PF24921 RING_XB3-XBAT31 320-375 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772241.1`	Pfam	`PF12796`	Ank_2	Repeat	15	106	3e-38	131.0	Ankyrin repeats (3 copies)
`XP_057772241.1`	Pfam	`PF13637`	Ank_4	Repeat	18	66	1.5e-26	92.6	Ankyrin repeats (many copies)
`XP_057772241.1`	Pfam	`PF13606`	Ank_3	Repeat	46	73	8.9e-30	99.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF00023`	Ank	Repeat	46	76	2.2e-38	128.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF13606`	Ank_3	Repeat	79	106	8.9e-30	99.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF00023`	Ank	Repeat	80	107	2.2e-38	128.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF13637`	Ank_4	Repeat	85	130	1.5e-26	92.6	Ankyrin repeats (many copies)
`XP_057772241.1`	Pfam	`PF00023`	Ank	Repeat	112	134	2.2e-38	128.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF12796`	Ank_2	Repeat	112	184	3e-38	131.0	Ankyrin repeats (3 copies)
`XP_057772241.1`	Pfam	`PF13606`	Ank_3	Repeat	158	182	8.9e-30	99.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF00023`	Ank	Repeat	158	187	2.2e-38	128.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF13637`	Ank_4	Repeat	162	212	1.5e-26	92.6	Ankyrin repeats (many copies)
`XP_057772241.1`	Pfam	`PF13606`	Ank_3	Repeat	195	220	8.9e-30	99.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF00023`	Ank	Repeat	195	225	2.2e-38	128.8	Ankyrin repeat
`XP_057772241.1`	Pfam	`PF12796`	Ank_2	Repeat	195	247	3e-38	131.0	Ankyrin repeats (3 copies)
`XP_057772241.1`	Pfam	`PF24921`	RING_XB3-XBAT31	Domain	320	375	1.2e-22	80.4	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916258.1
ATCTTCCAAAAAAGAACTGTACACTATTTCAGTAGTATATATTAGTATTATGATTAAATAATGCATCTGCCCGCAAAATATCTGAGTGCTGCCCGTTCTCACACGCCCCTCTCTCTCCGACACGGTCAGCTTTTCTCTCTCTCTCCTGAGTTCTGCCTTCCCGGGCAGCTCCATACAAATAAATATGTGAGACGCGCTTTATTTCCTCTCTTCAGCCACCACCACCAACTTTCCCGGTGGTGCAGGAGATGCGCCGCCGC...

CDS

1 records

下载 CDS FASTA

LOC130991845
ATGGGTCAGGGGATGAGCTGCAGTAGTAGTGAGGAGCAGGGGCTGTTCGGTGCAGTGCAGTTCGGGGATTTGGAGATGTTTGAAGCCATTTTGAAAAGGGATTCATCTCTCATTTATCATTCTACTGTTTATGATCGTAACTCTCCTCTGCATATCGCTGCCGCTAACGGCCAGATCGAGATTCTCTCATTGCTTCTCGACCGATCCGTGAAGCCGGATGTGTTGAATCGGCATAAACAGACTCCATTGATGCTGGCTGC...

Protein

1 records

下载 Protein FASTA

XP_057772241.1
MGQGMSCSSSEEQGLFGAVQFGDLEMFEAILKRDSSLIYHSTVYDRNSPLHIAAANGQIEILSLLLDRSVKPDVLNRHKQTPLMLAAMHGKISCVKKLIESGANILMFDTLNGRTCLHYSAYYGHFDCLEAILSAARTSHVSASWGYSRFVNIRDSKGATPLHLAARQRRPQCVHILLDNGALVCASTGGYSFPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVASRHRHGACAALLNPSSAEPLVWPSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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