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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000791

染色体: Chr07 坐标: 5584876-5590595 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000791
名称SmilChr07G000791
描述uncharacterized SmilChr07G000791
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5584876 - 5590595 / -

ID 对照

NCBI Gene IDLOC130991868
GeneID130991868
locus_tag-
NCBI NameLOC130991868
原始查询SmilChr07G000791

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os03g0275400; species=rice; confidence=medium
产物hit=Os03g0275400; species=rice; confidence=medium
ArabidopsisAT3G56930 (AT3G56930)
DHHC-type zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:824860]
identity=32.1; qcov=0.539; evalue=4.38e-09; confidence=low
RiceOs03g0275400
-
identity=40; qcov=0.947; evalue=1.95e-48; confidence=medium
GOGO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus); GO:0006612 (protein targeting to membrane); GO:0018230 (peptidyl-L-cysteine S-palmitoylation); GO:0019706 (protein-cysteine S-palmitoyltransferase activity)
KEGG-
PfamPF01529 (DHHC)
InterPro-
eggNOG-
NRGeneID:130991868

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057772277.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057772279.1
3 Golgi apparatus 高尔基体 0.80000 XP_057772285.1
4 Vacuole 液泡 0.20000 XP_057772277.1
5 Vacuole membrane 液泡膜 0.20000 XP_057772277.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5585593 C T EMS_canonical_SNV CDS_variant 1 B133
Chr7:5585810 C T EMS_canonical_SNV CDS_variant 1 C28
Chr7:5585823 G A EMS_canonical_SNV CDS_variant 1 C28
Chr7:5586762 C T EMS_canonical_SNV CDS_variant 1 B118
Chr7:5586792 C T EMS_canonical_SNV CDS_variant 3 B128,B136,B93
Chr7:5586822 C T EMS_canonical_SNV CDS_variant 1 B69
Chr7:5587636 G A EMS_canonical_SNV CDS_variant 1 B133
Chr7:5588987 G A EMS_canonical_SNV CDS_variant 1 C28
Chr7:5588993 GA G 1bp_deletion frameshift_variant 9 B110,B114,B84,B88,C24,C36,C7,C82,D4
Chr7:5589106 G A EMS_canonical_SNV CDS_variant 2 B133,B99
Chr7:5589136 G A EMS_canonical_SNV CDS_variant 2 C28,C63
Chr7:5589138 G A EMS_canonical_SNV CDS_variant 4 B25,C16,C35,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772272.1
345 aa
N
1
172
345
DHHC
C
PF01529 DHHC 186-303 aa
XP_057772273.1
345 aa
N
1
172
345
DHHC
C
PF01529 DHHC 186-303 aa
XP_057772274.1
335 aa
N
1
168
335
DHHC
C
PF01529 DHHC 176-293 aa
XP_057772275.1
335 aa
N
1
168
335
DHHC
C
PF01529 DHHC 176-293 aa
XP_057772276.1
335 aa
N
1
168
335
DHHC
C
PF01529 DHHC 176-293 aa
XP_057772277.1
325 aa
N
1
162
325
DHHC
C
PF01529 DHHC 186-274 aa
XP_057772279.1
317 aa
N
1
158
317
DHHC
C
PF01529 DHHC 186-215 aa
XP_057772280.1
315 aa
N
1
158
315
DHHC
C
PF01529 DHHC 176-264 aa
XP_057772281.1
307 aa
N
1
154
307
DHHC
C
PF01529 DHHC 176-205 aa
XP_057772282.1
297 aa
N
1
148
297
DHHC
C
PF01529 DHHC 186-215 aa
XP_057772283.1
289 aa
N
1
144
289
DHHC
C
PF01529 DHHC 186-275 aa
XP_057772284.1
281 aa
N
1
140
281
DHHC
C
PF01529 DHHC 122-239 aa
XP_057772285.1
271 aa
N
1
136
271
DHHC
C
PF01529 DHHC 112-229 aa
XP_057772286.1
261 aa
N
1
130
261
DHHC
C
PF01529 DHHC 122-210 aa
XP_057772287.1
243 aa
N
1
122
243
DHHC
C
PF01529 DHHC 112-141 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772272.1 Pfam PF01529 DHHC Family 186 303 1.2e-20 74.7 DHHC palmitoyltransferase
XP_057772273.1 Pfam PF01529 DHHC Family 186 303 1.2e-20 74.7 DHHC palmitoyltransferase
XP_057772274.1 Pfam PF01529 DHHC Family 176 293 1.1e-20 74.8 DHHC palmitoyltransferase
XP_057772275.1 Pfam PF01529 DHHC Family 176 293 1.1e-20 74.8 DHHC palmitoyltransferase
XP_057772276.1 Pfam PF01529 DHHC Family 176 293 1.1e-20 74.8 DHHC palmitoyltransferase
XP_057772277.1 Pfam PF01529 DHHC Family 186 274 8.4e-18 65.4 DHHC palmitoyltransferase
XP_057772279.1 Pfam PF01529 DHHC Family 186 215 1.5e-07 32.3 DHHC palmitoyltransferase
XP_057772280.1 Pfam PF01529 DHHC Family 176 264 7.9e-18 65.5 DHHC palmitoyltransferase
XP_057772281.1 Pfam PF01529 DHHC Family 176 205 1.4e-07 32.3 DHHC palmitoyltransferase
XP_057772282.1 Pfam PF01529 DHHC Family 186 215 3.3e-08 34.4 DHHC palmitoyltransferase
XP_057772283.1 Pfam PF01529 DHHC Family 186 275 3.7e-18 66.6 DHHC palmitoyltransferase
XP_057772284.1 Pfam PF01529 DHHC Family 122 239 7.4e-21 75.3 DHHC palmitoyltransferase
XP_057772285.1 Pfam PF01529 DHHC Family 112 229 6.8e-21 75.4 DHHC palmitoyltransferase
XP_057772286.1 Pfam PF01529 DHHC Family 122 210 5.4e-18 66.1 DHHC palmitoyltransferase
XP_057772287.1 Pfam PF01529 DHHC Family 112 141 3.8e-08 34.2 DHHC palmitoyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XM_057916298.1
GAAACAAAAAAAATTAAATTGGAAAAACCTCTCTTTGTAATTGTAATTTCACCTTAACAAAATACTGTAGTATCGAAGAGCAACGAAATTGAATTTCTCAATCAGAACTCTAATTTTGACGAAATGTTAGAAGCAGAAGAAGAAATTATCCTGCGCCACAATCCAAAATGGAAGAAACCTTCCATAATTAGTTTTTTGGTTTCCTTCATCTCAGTTTCTTTCACACAATTCTCCTTTTCTTTGCTCTCTCTCTTCCTCCC...
XM_057916293.1
GAAACAAAAAAAATTAAATTGGAAAAACCTCTCTTTGTAATTGTAATTTCACCTTAACAAAATACTGTAGTATCGAAGAGCAACGAAATTGAATTTCTCAATCAGAACTCTAATTTTGACGAAATGTTAGAAGCAGAAGAAGAAATTATCCTGCGCCACAATCCAAAATGGAAGAAACCTTCCATAATTAGTTTTTTGGTTTCCTTCATCTCAGTTTCTTTCACACAATTCTCCTTTTCTTTGCTCTCTCTCTTCCTCCC...

CDS

15 records

下载 CDS FASTA
LOC130991868
ATGTTAGAAGCAGAAGAAGAAATTATCCTGCGCCACAATCCAAAATGGAAGAAACCTTCCATAATTAGTTTTTTGGTTTCCTTCATCTCAGTTTCTTTCACACAATTCTCCTTTTCTTTGCTCTCTCTCTTCCTCCCTACTTCATCCTTTCTCTCTCTTCTTCCTCTCTCAGCTGTATTGCTCGTAGTTGTGATGGGGATGGTGAGATTGTGCAAGAGGGTTACTGGAGTGAGGGCTTCGGCGCCGGCTTTTGTCTTCTT...
LOC130991868
ATGTTAGAAGCAGAAGAAGAAATTATCCTGCGCCACAATCCAAAATGGAAGAAACCTTCCATAATTAGTTTTTTGGTTTCCTTCATCTCAGTTTCTTTCACACAATTCTCCTTTTCTTTGCTCTCTCTCTTCCTCCCTACTTCATCCTTTCTCTCTCTTCTTCCTCTCTCAGCTGTATTGCTCGTAGTTGTGATGGGGATGGTGAGATTGTGCAAGAGGGTTACTGGAGTGAGGGCTTCGGCGCCGGCTTTTGTCTTCTT...

Protein

15 records

下载 Protein FASTA
XP_057772272.1
MLEAEEEIILRHNPKWKKPSIISFLVSFISVSFTQFSFSLLSLFLPTSSFLSLLPLSAVLLVVVMGMVRLCKRVTGVRASAPAFVFFSILFVWAIYIYVVRRGPVLILQLNCVISSFLDIVMNMEIIMVLIGLCRIMLLDPGFLAHHSRAHLYVQNSIDEIESQGEELKVSPSVAHQESQAEEAFTRYRRVRYCRYCKNYVMGFDHHCPAFGNCIGKRNHALFIVLIVGFAISEASFVVCASQFTTKSETSKDVGEKALT...
XP_057772273.1
MLEAEEEIILRHNPKWKKPSIISFLVSFISVSFTQFSFSLLSLFLPTSSFLSLLPLSAVLLVVVMGMVRLCKRVTGVRASAPAFVFFSILFVWAIYIYVVRRGPVLILQLNCVISSFLDIVMNMEIIMVLIGLCRIMLLDPGFLAHHSRAHLYVQNSIDEIESQGEELKVSPSVAHQESQAEEAFTRYRRVRYCRYCKNYVMGFDHHCPAFGNCIGKRNHALFIVLIVGFAISEASFVVCASQFTTKSETSKDVGEKALT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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