当前解析结果
SmilChr07G000796| 统一新 Gene ID | SmilChr07G000796 |
|---|---|
| 名称 | SmilChr07G000796 |
| 描述 | fasciclin-like arabinogalactan protein 4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5618953 - 5620636 / - |
| NCBI Gene ID | LOC130991967 |
|---|---|
| GeneID | 130991967 |
| locus_tag | - |
| NCBI Name | LOC130991967 |
| 原始查询 | SmilChr07G000796 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | fasciclin-like arabinogalactan protein 4 |
| 产物 | fasciclin-like arabinogalactan protein 4 |
| Arabidopsis | AT3G46550 (SOS5)Fasciclin-like arabinogalactan family protein [Source:NCBI gene (formerly Entrezgene);Acc:823808] identity=55.7; qcov=0.891; evalue=3.49e-120; confidence=high |
| Rice | Os01g0841100 (OsFLA12)- identity=59.5; qcov=0.894; evalue=3.23e-136; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0009738 (abscisic acid-activated signaling pathway); GO:0009825 (multidimensional cell growth); GO:0048354 (mucilage biosynthetic process involved in seed coat development) |
| KEGG | - |
| Pfam | PF02469 (Fasciclin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772384.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057772384.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057772384.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772384.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772384.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5619322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B35,B37,C23,C85 |
Chr7:5619342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:5619378 |
C |
CT |
1bp_insertion | frameshift_variant | 31 | A15,A20,A24,A3,A6,A8,B107,B108,B119,B125,B14,B26,B3,B30,B4,B47,B61,B64,B85,B91,B98,C22,C35,C38,C52,C53,C55,C58,C66,C71,D3 |
Chr7:5619379 |
C |
CA |
1bp_insertion | frameshift_variant | 220 | A1,A10,A11,A13,A14,A16,A18,A19,A2,A21,A22,A23,A24,A25,A4,A5,A7,A9,B1,B10,B100,B101,B104,B105,B106,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B121,B122,B123,B124,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B27,B28,B29,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B62,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B86,B87,B88,B89,B9,B92,B93,B94,B95,B96,B97,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C49,C5,C50,C52,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C67,C68,C69,C7,C70,C71,C72,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr7:5619381 |
GC |
G |
1bp_deletion | frameshift_variant | 242 | A1,A10,A11,A13,A14,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B104,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C52,C53,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D6,D7,D8,D9 |
Chr7:5619417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr7:5619436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B2,B78,C8 |
Chr7:5619477 |
G |
A |
EMS_canonical_SNV | stop_gained | 122 | A1,A10,A14,A19,A21,A22,A23,A5,A6,A7,B100,B104,B105,B106,B108,B109,B11,B111,B114,B115,B118,B119,B122,B123,B124,B125,B128,B129,B13,B131,B132,B134,B139,B14,B140,B15,B16,B17,B18,B20,B22,B24,B32,B36,B41,B43,B45,B46,B47,B48,B52,B53,B54,B55,B59,B6,B60,B61,B62,B67,B68,B70,B71,B72,B78,B79,B80,B85,B88,B89,B9,B91,B94,B95,B96,B99,C1,C10,C12,C13,C16,C19,C20,C22,C23,C24,C26,C27,C28,C29,C3,C31,C39,C41,C5,C50,C52,C53,C55,C56,C57,C58,C59,C6,C61,C63,C64,C66,C68,C69,C7,C77,C79,C8,C80,C84,D11,D2,D6,D7,D8,D9 |
Chr7:5619498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr7:5619549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,C30,C7,C76,C84 |
Chr7:5619589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:5619601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B33,B53,B55,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772384.1PF02469
Fasciclin 195-330 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772384.1 |
Pfam | PF02469 |
Fasciclin | Domain | 195 | 330 | 1.2e-24 | 87.6 | Fasciclin domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。