当前解析结果
SmilChr07G000798| 统一新 Gene ID | SmilChr07G000798 |
|---|---|
| 名称 | SmilChr07G000798 |
| 描述 | uncharacterized SmilChr07G000798 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5630756 - 5634078 / - |
| NCBI Gene ID | LOC130991969 |
|---|---|
| GeneID | 130991969 |
| locus_tag | - |
| NCBI Name | LOC130991969 |
| 原始查询 | SmilChr07G000798 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cruciferin (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:818548]; symbol=AT2G39650; hit=AT2G39650; species=arabidopsis; confidence=high |
| 产物 | cruciferin (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:818548]; symbol=AT2G39650; hit=AT2G39650; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G39650 (AT2G39650)cruciferin (DUF506) [Source:NCBI gene (formerly Entrezgene);Acc:818548] identity=46.5; qcov=0.935; evalue=6.56e-77; confidence=high |
| Rice | Os01g0973600- identity=50; qcov=0.884; evalue=1.19e-75; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04720 (PDDEXK_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991969 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772386.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057772386.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057772386.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772386.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772386.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5631074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B26,B69 |
Chr7:5631085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:5631154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr7:5631178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:5631184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B99 |
Chr7:5631214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:5631255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr7:5631399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:5631572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B79 |
Chr7:5631615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C73 |
Chr7:5631648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr7:5631680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772386.1PF04720
PDDEXK_6 61-249 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772386.1 |
Pfam | PF04720 |
PDDEXK_6 | Family | 61 | 249 | 1.7e-58 | 198.9 | PDDEXK-like family of unknown function |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。