当前解析结果
SmilChr07G000816| 统一新 Gene ID | SmilChr07G000816 |
|---|---|
| 名称 | SmilChr07G000816 |
| 描述 | ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5751069 - 5755801 / - |
| NCBI Gene ID | LOC130991984 |
|---|---|
| GeneID | 130991984 |
| locus_tag | - |
| NCBI Name | LOC130991984 |
| 原始查询 | SmilChr07G000816 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent zinc metalloprotease FTSH 10, mitochondrial-like |
| 产物 | ATP-dependent zinc metalloprotease FTSH 10%2C mitochondrial-like |
| Arabidopsis | AT1G07510 (ftsh10)FTSH protease 10 [Source:NCBI gene (formerly Entrezgene);Acc:837265] identity=70.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0458400 (OsFtsH8)- identity=74.9; qcov=0.939; evalue=0; confidence=high |
| GO | GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0005745 (m-AAA complex); GO:0008270 (zinc ion binding); GO:0009535 (chloroplast thylakoid membrane); GO:0016887 (ATP hydrolysis activity); GO:0034982 (mitochondrial protein processing); GO:0065003 (protein-containing complex assembly) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF01434 (Peptidase_M41); PF06480 (FtsH_ext); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991984 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772407.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057772407.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057772407.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772407.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772407.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5751507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr7:5751674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,D10 |
Chr7:5752565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,C7,D11 |
Chr7:5753126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:5753473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,D11 |
Chr7:5755239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B133 |
Chr7:5755344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772407.1PF06480
FtsH_ext 148-267 aa
PF00004
AAA 378-510 aa
PF17862
AAA_lid_3 540-578 aa
PF01434
Peptidase_M41 593-775 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772407.1 |
Pfam | PF06480 |
FtsH_ext | Family | 148 | 267 | 9.1e-13 | 49.0 | FtsH Extracellular |
XP_057772407.1 |
Pfam | PF00004 |
AAA | Domain | 378 | 510 | 5.7e-43 | 147.2 | ATPase family associated with various cellular activities (AAA) |
XP_057772407.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 540 | 578 | 8.1e-13 | 48.4 | AAA+ lid domain |
XP_057772407.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 593 | 775 | 3.2e-66 | 223.6 | Peptidase family M41 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。