当前解析结果
SmilChr07G000819| 统一新 Gene ID | SmilChr07G000819 |
|---|---|
| 名称 | SmilChr07G000819 |
| 描述 | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 5778555 - 5783638 / - |
| NCBI Gene ID | LOC130991986 |
|---|---|
| GeneID | 130991986 |
| locus_tag | - |
| NCBI Name | LOC130991986 |
| 原始查询 | SmilChr07G000819 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like |
| 产物 | ATP-dependent zinc metalloprotease FTSH 8%2C mitochondrial-like |
| Arabidopsis | AT1G07510 (ftsh10)FTSH protease 10 [Source:NCBI gene (formerly Entrezgene);Acc:837265] identity=69; qcov=0.944; evalue=0; confidence=high |
| Rice | Os05g0458400 (OsFtsH8)- identity=70.6; qcov=0.955; evalue=0; confidence=high |
| GO | GO:0004176 (ATP-dependent peptidase activity); GO:0004222 (metalloendopeptidase activity); GO:0005524 (ATP binding); GO:0005745 (m-AAA complex); GO:0008270 (zinc ion binding); GO:0009535 (chloroplast thylakoid membrane); GO:0016887 (ATP hydrolysis activity); GO:0034982 (mitochondrial protein processing); GO:0065003 (protein-containing complex assembly) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF01434 (Peptidase_M41); PF06480 (FtsH_ext); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991986 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772409.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057772409.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057772409.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057772411.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:5778835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:5778836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:5778899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B41,C1,C10,C42 |
Chr7:5779006 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr7:5779256 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:5779446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B34 |
Chr7:5779521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:5779921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B101,B87,C60 |
Chr7:5780347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B26,B74,C39 |
Chr7:5780695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B134,B26,B74,C39 |
Chr7:5780765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:5782645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772409.1PF06480
FtsH_ext 137-252 aa
PF00004
AAA 365-497 aa
PF17862
AAA_lid_3 530-568 aa
PF01434
Peptidase_M41 583-765 aa
XP_057772410.1PF06480
FtsH_ext 136-251 aa
PF00004
AAA 364-496 aa
PF17862
AAA_lid_3 529-567 aa
PF01434
Peptidase_M41 582-764 aa
XP_057772411.1PF06480
FtsH_ext 93-208 aa
PF00004
AAA 321-453 aa
PF17862
AAA_lid_3 486-524 aa
PF01434
Peptidase_M41 539-721 aa
XP_057772412.1PF06480
FtsH_ext 93-208 aa
PF00004
AAA 321-453 aa
PF17862
AAA_lid_3 486-524 aa
PF01434
Peptidase_M41 539-721 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772409.1 |
Pfam | PF06480 |
FtsH_ext | Family | 137 | 252 | 1.7e-10 | 41.7 | FtsH Extracellular |
XP_057772409.1 |
Pfam | PF00004 |
AAA | Domain | 365 | 497 | 8.7e-43 | 146.6 | ATPase family associated with various cellular activities (AAA) |
XP_057772409.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 530 | 568 | 6.6e-13 | 48.7 | AAA+ lid domain |
XP_057772409.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 583 | 765 | 1e-65 | 221.9 | Peptidase family M41 |
XP_057772410.1 |
Pfam | PF06480 |
FtsH_ext | Family | 136 | 251 | 1.7e-10 | 41.7 | FtsH Extracellular |
XP_057772410.1 |
Pfam | PF00004 |
AAA | Domain | 364 | 496 | 8.6e-43 | 146.6 | ATPase family associated with various cellular activities (AAA) |
XP_057772410.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 529 | 567 | 6.6e-13 | 48.7 | AAA+ lid domain |
XP_057772410.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 582 | 764 | 1e-65 | 221.9 | Peptidase family M41 |
XP_057772411.1 |
Pfam | PF06480 |
FtsH_ext | Family | 93 | 208 | 1.8e-10 | 41.7 | FtsH Extracellular |
XP_057772411.1 |
Pfam | PF00004 |
AAA | Domain | 321 | 453 | 8e-43 | 146.7 | ATPase family associated with various cellular activities (AAA) |
XP_057772411.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 486 | 524 | 6.2e-13 | 48.7 | AAA+ lid domain |
XP_057772411.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 539 | 721 | 9.4e-66 | 222.0 | Peptidase family M41 |
XP_057772412.1 |
Pfam | PF06480 |
FtsH_ext | Family | 93 | 208 | 1.8e-10 | 41.7 | FtsH Extracellular |
XP_057772412.1 |
Pfam | PF00004 |
AAA | Domain | 321 | 453 | 8e-43 | 146.7 | ATPase family associated with various cellular activities (AAA) |
XP_057772412.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 486 | 524 | 6.2e-13 | 48.7 | AAA+ lid domain |
XP_057772412.1 |
Pfam | PF01434 |
Peptidase_M41 | Domain | 539 | 721 | 9.4e-66 | 222.0 | Peptidase family M41 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。