Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000837`

染色体: Chr07 坐标: 5961133-5964821 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000837`
名称	SmilChr07G000837
描述	laccase-4
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5961133 - 5964821 / `-`

ID 对照

NCBI Gene ID	`LOC130992007`
GeneID	`130992007`
locus_tag	`-`
NCBI Name	`LOC130992007`
原始查询	`SmilChr07G000837`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	laccase-4
产物	laccase-4
Arabidopsis	`AT2G38080` (IRX12) Laccase/Diphenol oxidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818386] identity=67.7; qcov=0.998; evalue=0; confidence=high
Rice	`Os01g0634500` (OsLAC2) - identity=60.1; qcov=1; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0046274 (lignin catabolic process); GO:0048046 (apoplast); GO:0052716 (hydroquinone:oxygen oxidoreductase activity)
KEGG	-
Pfam	PF00394 (Cu-oxidase); PF07731 (Cu-oxidase_2); PF07732 (Cu-oxidase_3)
InterPro	-
eggNOG	-
NR	GeneID:130992007

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057772438.1`
2	Nucleus	细胞核	0.00000	`XP_057772438.1`
3	Chromosome	染色体	0.00000	`XP_057772438.1`
4	Centromere	着丝粒	0.00000	`XP_057772438.1`
5	Chromatin	染色质	0.00000	`XP_057772438.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5961330`	`T`	`TC`	1bp_insertion	frameshift_variant	5	B24,B56,B9,C34,C49
`Chr7:5961330`	`T`	`TC`	1bp_insertion	CDS_variant	5	B24,B56,B9,C34,C49
`Chr7:5961803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,A24
`Chr7:5961830`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B42,B43,B90,B92
`Chr7:5961830`	`C`	`CA`	1bp_insertion	CDS_variant	4	B42,B43,B90,B92
`Chr7:5961933`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B103,C86
`Chr7:5961944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B111,B120
`Chr7:5962069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr7:5962076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,C15,D6
`Chr7:5962147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C26,D7
`Chr7:5962191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr7:5962256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772438.1

558 aa

279

558

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 31-144 aa PF00394 Cu-oxidase 158-306 aa PF07731 Cu-oxidase_2 408-541 aa

XP_057772439.1

478 aa

239

478

Cu-oxidase_3

Cu-oxidase

Cu-oxidase_2

PF07732 Cu-oxidase_3 1-64 aa PF00394 Cu-oxidase 78-226 aa PF07731 Cu-oxidase_2 328-461 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772438.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	31	144	4.8e-42	143.5	Multicopper oxidase
`XP_057772438.1`	Pfam	`PF00394`	Cu-oxidase	Domain	158	306	1.6e-42	146.0	Multicopper oxidase
`XP_057772438.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	408	541	9.9e-46	155.6	Multicopper oxidase
`XP_057772439.1`	Pfam	`PF07732`	Cu-oxidase_3	Domain	1	64	2.2e-21	76.9	Multicopper oxidase
`XP_057772439.1`	Pfam	`PF00394`	Cu-oxidase	Domain	78	226	1.7e-42	145.9	Multicopper oxidase
`XP_057772439.1`	Pfam	`PF07731`	Cu-oxidase_2	Domain	328	461	1.1e-45	155.4	Multicopper oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916455.1
AAATCACAACTACGACTATAAATATACATTCTCCCAAACCACACACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCTGCCTGGCTACGATTCTTGTTGCTGCTGATCACTATTTTACTGCCTACAATGGTGGAATCGGAGGTTCGTCGATATAAATTCAATGTGGTGATGAAAAACTCAACAAAA...

XM_057916456.1
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCTGCCTGGCTACGATTCTTGTTGCTGCTGATCACTATTTTACTGCCTACAATGGTGGAATCGGAGGTTCGTCGATATAAATTCAATGCACGGAATAAGGCAACTCCGGACCGGGTGGGCGGATGGACCGGCTTACATAACCCAATGTCCGGTCCAACCGGG...

CDS

2 records

下载 CDS FASTA

LOC130992007
ATGGCTGCCTGGCTACGATTCTTGTTGCTGCTGATCACTATTTTACTGCCTACAATGGTGGAATCGGAGGTTCGTCGATATAAATTCAATGTGGTGATGAAAAACTCAACAAAATTATGCTCAAGCAAGCAAGTAGTGACTGTTAATGGACGTTTTCCCGGTCCAAACATCTACGCCAGAGAAGGCGACACTCTATTAATCAAAGTCGTCAATCACGTTAATTATAATATGACTATCCACTGGCACGGAATAAGGCAACT...

LOC130992007
ATGCACGGAATAAGGCAACTCCGGACCGGGTGGGCGGATGGACCGGCTTACATAACCCAATGTCCGGTCCAACCGGGTGAAAGCTATGTGTATAATTTTACAGTAAGTGAGCAGCGAGGCACGCTTCTGTGGCACGCACACATACTATGGCTTAGAGCTACCATTCATGGCGCCATTATTGTCCTTCCCAACCATGCCCAGCCTTATCCCTTTCCTAAGCCCCACAAGGAGGAGGTCCTACTACTAGGGGAATGGTGGAA...

Protein

2 records

下载 Protein FASTA

XP_057772438.1
MAAWLRFLLLLITILLPTMVESEVRRYKFNVVMKNSTKLCSSKQVVTVNGRFPGPNIYAREGDTLLIKVVNHVNYNMTIHWHGIRQLRTGWADGPAYITQCPVQPGESYVYNFTVSEQRGTLLWHAHILWLRATIHGAIIVLPNHAQPYPFPKPHKEEVLLLGEWWKSDVEAVIDEAMASGNAPNVSDAHTINGHPGPRSDCLGQGGYKLVVMPAKTYLLRIINAALNTELFFKIAAHNLTVVEVDAAYVKPFATDTILL...

XP_057772439.1
MHGIRQLRTGWADGPAYITQCPVQPGESYVYNFTVSEQRGTLLWHAHILWLRATIHGAIIVLPNHAQPYPFPKPHKEEVLLLGEWWKSDVEAVIDEAMASGNAPNVSDAHTINGHPGPRSDCLGQGGYKLVVMPAKTYLLRIINAALNTELFFKIAAHNLTVVEVDAAYVKPFATDTILLAPGQTTNVLLTTDQPTARYQITASPFKSSPVTIDNTTATATVIYAGTSASAATILADRPPQNATPIAAAFTQSLRGLNSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器