Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000839`

染色体: Chr07 坐标: 5976446-5979359 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000839`
名称	SmilChr07G000839
描述	protein NRT1/ PTR FAMILY 8.1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	5976446 - 5979359 / `+`

ID 对照

NCBI Gene ID	`LOC130992011`
GeneID	`130992011`
locus_tag	`-`
NCBI Name	`LOC130992011`
原始查询	`SmilChr07G000839`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NRT1/ PTR FAMILY 8.1-like
产物	protein NRT1/ PTR FAMILY 8.1-like
Arabidopsis	`AT3G54140` (PTR1) peptide transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:824581] identity=65.1; qcov=1; evalue=0; confidence=high
Rice	`Os01g0142800` (OsNPF8.1) - identity=65.1; qcov=0.988; evalue=0; confidence=high
GO	GO:0006857 (oligopeptide transport); GO:0016020 (membrane); GO:0022857 (transmembrane transporter activity); GO:0055085 (transmembrane transport)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00854 (PTR2); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:130992011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057772446.1`
2	Nucleus	细胞核	0.00000	`XP_057772446.1`
3	Chromosome	染色体	0.00000	`XP_057772446.1`
4	Centromere	着丝粒	0.00000	`XP_057772446.1`
5	Chromatin	染色质	0.00000	`XP_057772446.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:5977340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B103,C86
`Chr7:5977439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B14,B34,C13,C34,C56
`Chr7:5977451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,C14
`Chr7:5977491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr7:5977572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,B27
`Chr7:5977588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B35,C23,C85
`Chr7:5977589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B69,D11
`Chr7:5977631`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:5977664`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:5977665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C42
`Chr7:5977717`	`CGA`	`C`	2bp_deletion	frameshift_variant	2	C3,D1
`Chr7:5977717`	`CGA`	`C`	2bp_deletion	CDS_variant	2	C3,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772446.1

569 aa

284

569

MFS_1

PTR2

PF07690 MFS_1 50-506 aa PF00854 PTR2 96-525 aa

XP_057772447.1

569 aa

284

569

MFS_1

PTR2

PF07690 MFS_1 50-506 aa PF00854 PTR2 96-525 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772446.1`	Pfam	`PF07690`	MFS_1	Family	50	506	3.9e-10	39.9	Major Facilitator Superfamily
`XP_057772446.1`	Pfam	`PF00854`	PTR2	Family	96	525	4.9e-120	401.7	POT family
`XP_057772447.1`	Pfam	`PF07690`	MFS_1	Family	50	506	3.9e-10	39.9	Major Facilitator Superfamily
`XP_057772447.1`	Pfam	`PF00854`	PTR2	Family	96	525	4.9e-120	401.7	POT family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916464.1
AAATTTCCAAAACCTTTTTCGAGTAAAGAAAAGTTTTTTCTCTACATATACTCAATTCGAAGTTAGGAGGTAGAAACTTTCGTTTCCAACCTTATTTTTTGAAAATCTCTCACATTTTGGGCAATAACTTCGTGTTCCCAAATTCATTCTCTTATGAGTAACAAATCAAGATTTGTGAAATTCTGCCAGTAAAAATCCAAGAATCGTGCTTATTTTTTCTGCAGCTTGGATCCATCTGCAGCTAGCCATGGCGGAGGACG...

XM_057916463.1
AAATTTCCAAAACCTTTTTCGAGTAAAGAAAAGTTTTTTCTCTACATATACTCAATTCGAAGTTAGGAGGTAGAAACTTTCGTTTCCAACCTTATTTTTTGAAAATCTCTCACATTTTGGGCAATAACTTCGTGTTCCCAAATTCATTCTCTTATGAGTAACAAATCAAGATTTGTGAAATTCTGCCAGTAAAAATCCAAGAATCGTGCTTATTTTTTCTGCAGCTAGCCATGGCGGAGGACGATAACTACACCAAAGAT...

CDS

2 records

下载 CDS FASTA

LOC130992011
ATGGCGGAGGACGATAACTACACCAAAGATGGCACCGTCGACTACAAGGGCAAACCGGCCAACAGGAAGATAACAGGAACTTGGAGGGCCTGCCCCTTCATTCTTGGAAATGAATGTTGTGAGAGATTAGCCTACTATGGAATGAGCAGCAACCTCTTTCTCTATTTCACCAACCAACTCAATCAACACAACGCCGTCGCCTCCAAAAACCTCTCTAATTGGTCCGGCACTTGCTACGTCATGCCGTTAATCGGAGCCTT...

Protein

2 records

下载 Protein FASTA

XP_057772446.1
MAEDDNYTKDGTVDYKGKPANRKITGTWRACPFILGNECCERLAYYGMSSNLFLYFTNQLNQHNAVASKNLSNWSGTCYVMPLIGAFLADSYLGRYWTIATFSIIYVIGMTLLTLSAAAPGLRPTCREKDDCYATGSQTAVCFAALYLVALGTGGIKPCVSSYGADQFDDADEVERGHKGSFFNWFYFSINIGALIAGSVLVWIQVNIGWGWGFGVPAAAMAVAVAFFFSGTRLYRYQKPGGSPLTRLCQVVVAAVRKHR...

XP_057772447.1
MAEDDNYTKDGTVDYKGKPANRKITGTWRACPFILGNECCERLAYYGMSSNLFLYFTNQLNQHNAVASKNLSNWSGTCYVMPLIGAFLADSYLGRYWTIATFSIIYVIGMTLLTLSAAAPGLRPTCREKDDCYATGSQTAVCFAALYLVALGTGGIKPCVSSYGADQFDDADEVERGHKGSFFNWFYFSINIGALIAGSVLVWIQVNIGWGWGFGVPAAAMAVAVAFFFSGTRLYRYQKPGGSPLTRLCQVVVAAVRKHR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器