Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000841

染色体: Chr07 坐标: 5985669-5987754 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000841
名称SmilChr07G000841
描述uncharacterized SmilChr07G000841
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5985669 - 5987754 / +

ID 对照

NCBI Gene IDLOC130992012
GeneID130992012
locus_tag-
NCBI NameLOC130992012
原始查询SmilChr07G000841

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述homeobox prospero protein [Source:NCBI gene (formerly Entrezgene);Acc:836009]; symbol=AT5G58920; hit=AT5G58920; species=arabidopsis; confidence=high
产物homeobox prospero protein [Source:NCBI gene (formerly Entrezgene);Acc:836009]; symbol=AT5G58920; hit=AT5G58920; species=arabidopsis; confidence=high
ArabidopsisAT5G58920 (AT5G58920)
homeobox prospero protein [Source:NCBI gene (formerly Entrezgene);Acc:836009]
identity=69; qcov=0.942; evalue=8.34e-76; confidence=high
RiceOs01g0362000
-
identity=65.6; qcov=0.623; evalue=5.98e-42; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992012

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057772448.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057772448.1
3 Mitochondrion inner membrane 线粒体内膜 1.00000 XP_057772448.1
4 Nucleus 细胞核 0.00000 XP_057772448.1
5 Chromosome 染色体 0.00000 XP_057772448.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5985840 TC T 1bp_deletion frameshift_variant 1 B14
Chr7:5985840 TC T 1bp_deletion CDS_variant 1 B14
Chr7:5986598 C T EMS_canonical_SNV CDS_variant 1 B2
Chr7:5986629 C T EMS_canonical_SNV CDS_variant 4 B132,B85,C26,D7
Chr7:5986679 G A EMS_canonical_SNV CDS_variant 2 B123,B45
Chr7:5986748 C T EMS_canonical_SNV CDS_variant 1 B34
Chr7:5986917 C T EMS_canonical_SNV CDS_variant 2 A24,B140

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XR_009091226.1
TACTAGTGAAATATATTCGGTCCATCACAAGAGACGACGTACTAATTTTTATTGAAAAAGGAACCGAAGTTTAAAGACTACTGCTGAAATTCGACCCGAGAAAAATTCATTCTCGCCCTAATCATACCTAATTTTTCGATTCAAATCGTCATCAATGCCTCTCAAACGATTTCAAAAGCCAGCATTCGAAGCAGAGAAATACCTGAAAAAAATCGGGCTTGGAAAAGAAGATCACCATTTCTGGAAGCAAGTTGGCAAAG...
XM_057916465.1
AAATATATTCGGTCCATCACAAGAGACGACGTACTAATTTTTATTGAAAAAGGAACCGAAGTTTAAAGACTACTGCTGAAATTCGACCCGAGAAAAATTCATTCTCGCCCTAATCATACCTAATTTTTCGATTCAAATCGTCATCAATGCCTCTCAAACGATTTCAAAAGCCAGCATTCGAAGCAGAGAAATACCTGAAAAAAATCGGGCTTGGAAAAGAAGATCACCATTTCTGGAAGCAAGTTGGCAAAGCTCTGCTG...

CDS

1 records

下载 CDS FASTA
LOC130992012
ATGCCTCTCAAACGATTTCAAAAGCCAGCATTCGAAGCAGAGAAATACCTGAAAAAAATCGGGCTTGGAAAAGAAGATCACCATTTCTGGAAGCAAGTTGGCAAAGCTCTGCTGAAGACGTACGCGCTGTTCGGAGTAGTGTGGTTTCTGAACGAGACGTCGCCGTTTGGGTGGTGGACGCTGAAGCCGATGCCCAAGGAGGAGAAGGAGCTCGCCCACCTCTACGAGCGCCGCGAGTTCCCTTACCCGGGCGACGCAGA...

Protein

1 records

下载 Protein FASTA
XP_057772448.1
MPLKRFQKPAFEAEKYLKKIGLGKEDHHFWKQVGKALLKTYALFGVVWFLNETSPFGWWTLKPMPKEEKELAHLYERREFPYPGDAEAMEEFVAKGGMIGTTIGPKGIIETDKDSYNFQKDLQDKKLDQEALKLWVRMRNEVVSELQDKGFDVE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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