Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000842

染色体: Chr07 坐标: 5989810-5998124 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000842
名称SmilChr07G000842
描述AT-rich interactive domain-containing protein 1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向5989810 - 5998124 / +

ID 对照

NCBI Gene IDLOC130992014
GeneID130992014
locus_tag-
NCBI NameLOC130992014
原始查询SmilChr07G000842

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述AT-rich interactive domain-containing protein 1-like
产物AT-rich interactive domain-containing protein 1-like
ArabidopsisAT5G04110 (GYRB3)
DNA GYRASE B3 [Source:NCBI gene (formerly Entrezgene);Acc:830289]
identity=37.7; qcov=0.646; evalue=9.32e-35; confidence=medium
RiceOs04g0166400
-
identity=36.4; qcov=0.731; evalue=8.05e-36; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992014

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057772450.1
2 Chromosome 染色体 0.00000 XP_057772450.1
3 Centromere 着丝粒 0.00000 XP_057772450.1
4 Chromatin 染色质 0.00000 XP_057772450.1
5 Telomere 端粒 0.00000 XP_057772450.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:5995226 G A EMS_canonical_SNV CDS_variant 4 B129,C1,C48,D11
Chr7:5995259 C T EMS_canonical_SNV CDS_variant 1 B91
Chr7:5995315 C T EMS_canonical_SNV CDS_variant 2 B107,D2
Chr7:5995317 G A EMS_canonical_SNV CDS_variant 4 B64,C18,C84,C87
Chr7:5995346 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:5995353 C T EMS_canonical_SNV CDS_variant 4 B131,B134,B26,C34
Chr7:5995366 G A EMS_canonical_SNV CDS_variant 2 B75,D10
Chr7:5995460 G A EMS_canonical_SNV CDS_variant 1 B91
Chr7:5995617 G A EMS_canonical_SNV CDS_variant 3 B52,B98,C55
Chr7:5995645 G A EMS_canonical_SNV CDS_variant 4 A2,B131,B56,B96
Chr7:5995661 C T EMS_canonical_SNV CDS_variant 1 B34
Chr7:5995705 C T EMS_canonical_SNV CDS_variant 2 A9,D9

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009091227.1
TTCTAGGGTTCTTTTTGCTTTCTAGCCTATAAATATGCCTGAATCCTCCCATTGAATCCAAATAACATCACAATTTTCATCCTCACAAAATAGATTGAGAAAGGCAAGGTTTTTGGGATGCAAATTACTCAAGAACTAATGAGAAGCGTTTTTCTCTGCATAAAGCTGAAGATTACGGTGCCGAAGTAATTCTCGGAAGATTGCAGAGAACACAAAAGCATCCAAACAGAGTTGTAAGACAAGACTTGAACCACTTGCAT...
XM_057916468.1
TTCTAGGGTTCTTTTTGCTTTCTAGCCTATAAATATGCCTGAATCCTCCCATTGAATCCAAATAACATCACAATTTTCATCCTCACAAAATAGATTGAGAAAGGCAAGGTTTTTGGGATGCAAATTACTCAAGAACTAATGAGAAGCGTTTTTCTCTGCATAAAGCTGAAGATTACGGTGCCGAAGTAATTCTCGGAAGGTTAGTTTTTTGTTTCCATAGAATATGTAATTTCGAATCTTTCAAAATATCTGCGATTTAT...

CDS

2 records

下载 CDS FASTA
LOC130992014
ATGAAGTTGTCGAAGACCCCGAATAATCAAGGGATTGGCGGAAAAAAACCAATAGATTGGTTTTCCTTTGTCACCGATGAACGTGGTAAGTTAGCAATTCCAATTGGACCTCGTTTCCAAGTAGACATTCCGTCTTGGAATCCCCCATCTTCCAAGAGTCGCCTAACCATTGGTGACACGGAGTTGGAGGATGAAAATAAGTGGTTAAGCATTCCCGTATGGCCTCTAAAAGGAAGAAGCCAAAATACGTACCATGACAC...
LOC130992014
ATGAAGTTGTCGAAGACCCCGAATAATCAAGGGATTGGCGGAAAAAAACCAATAGATTGGTTTTCCTTTGTCACCGATGAACGTGGTAAGTTAGCAATTCCAATTGGACCTCGTTTCCAAGTAGACATTCCGTCTTGGAATCCCCCATCTTCCAAGAGTCGCCTAACCATTGGTGACACGGAGTTGGAGGATGAAAATAAGTGGTTAAGCATTCCCGTATGGCCTCTAAAAGGAAGAAGCCAAAATACGTACCATGACAC...

Protein

2 records

下载 Protein FASTA
XP_057772450.1
MKLSKTPNNQGIGGKKPIDWFSFVTDERGKLAIPIGPRFQVDIPSWNPPSSKSRLTIGDTELEDENKWLSIPVWPLKGRSQNTYHDTIGKGRPWGCICAFPGSIECVRQHVYDKRLQLKIELGPAFWKWRFDVMGEDVSKVWNSEEQRKFDYIVKKNLTSLDTSFVKVASQCFPCQSKGNIISYYLNVYIPRRISVQTRSSCNIVDSDDDNDDDDHHDDDDEHDHDHDHHYRHRGDGEDIARPKGPLKRLQADFTSSTCK...
XP_057772451.1
MKLSKTPNNQGIGGKKPIDWFSFVTDERGKLAIPIGPRFQVDIPSWNPPSSKSRLTIGDTELEDENKWLSIPVWPLKGRSQNTYHDTIGKGRPWGCICAFPGSIECVRQHVYDKRLQLKIELGPAFWKWRFDVMGEDVSKVWNSEEQRKFDYIVKKNLTSLDTSFVKVASQCFPCQSKGNIISYYLNVYIPRRISVQTRSSCNIVDSDDDNDDDDHHDDDDEHDHDHDHHYRHRGDGEDIARPKGPLKRLQADFTSSTCK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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