Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr07G000852`

Chromosome: Chr07 Coordinates: 6071625-6075667 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr07G000852`
Name	SmilChr07G000852
Description	non-specific phospholipase C1
Chromosome / SeqID	Chr07 / NC_080393.1
Coordinates and Strand	6071625 - 6075667 / `+`

ID Mapping

NCBI Gene ID	`LOC130992025`
GeneID	`130992025`
locus_tag	`-`
NCBI Name	`LOC130992025`
Original query	`SmilChr07G000852`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	non-specific phospholipase C1
Product	non-specific phospholipase C1
Arabidopsis	`AT1G07230` (NPC1) non-specific phospholipase C1 [Source:NCBI gene (formerly Entrezgene);Acc:837234] identity=74.8; qcov=0.994; evalue=0; confidence=high
Rice	`Os03g0826600` (NPC1) - identity=76.7; qcov=0.924; evalue=0; confidence=high
GO	GO:0009395 (phospholipid catabolic process); GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04185 (Phosphoesterase)
InterPro	-
eggNOG	-
NR	GeneID:130992025

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057772466.1`
2	Nucleus	细胞核	0.00000	`XP_057772466.1`
3	Chromosome	染色体	0.00000	`XP_057772466.1`
4	Centromere	着丝粒	0.00000	`XP_057772466.1`
5	Chromatin	染色质	0.00000	`XP_057772466.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr7:6072743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,D9
`Chr7:6072793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B133,D11
`Chr7:6072871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr7:6072933`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:6072937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:6072998`	`G`	`GA`	1bp_insertion	frameshift_variant	4	B57,C12,C43,C83
`Chr7:6072998`	`G`	`GA`	1bp_insertion	CDS_variant	4	B57,C12,C43,C83
`Chr7:6073000`	`GA`	`G`	1bp_deletion	frameshift_variant	3	C12,C43,C83
`Chr7:6073000`	`GA`	`G`	1bp_deletion	CDS_variant	3	C12,C43,C83
`Chr7:6073003`	`C`	`CTA`	2bp_insertion	frameshift_variant	4	B60,C12,C43,C83
`Chr7:6073003`	`C`	`CTA`	2bp_insertion	CDS_variant	4	B60,C12,C43,C83
`Chr7:6073004`	`CGG`	`C`	2bp_deletion	frameshift_variant	4	B60,C12,C43,C83

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057772466.1

538 aa

269

538

Phosphoesterase

PF04185 Phosphoesterase 41-401 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057772466.1`	Pfam	`PF04185`	Phosphoesterase	Family	41	401	4.7e-106	355.7	Phosphoesterase family

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057916483.1
TTTTTCGTTGAATGCAACAACTATAGTATAACTCTAACTTACGCCTTCTCGTATGAACCGATGCATGAGTTAAAATATACTTCTATGCTTCACTAGAATAAGTTTGTTTTTTTATTTTGGGAGATTAATAAGGTGGACCACACAATTTTTCTCCTCAAAAGTAAGTTTCTTAATTTAAGTGTTCAAAAGAATTGAATATATTCTAACGGGACGGAGGAAGTATTTTATAATTTTAAAAAAATTAGATATACATTAATTAT...

CDS

1 records

Download CDS FASTA

LOC130992025
ATGGGGTTTCTCCGGTTACTCCACCTCCGCGCCGCCGCCGTCTTCCTCACCTACCTCCTCCTCTCCGCCTCCGTCCCTCTCTCATCCCCCAAAAAAACCAAGCACAAAATCAACGGCCCCATCAAAACCTTCGTAGTAGTGGTGATGGAAAACCGCTCCTTCGACCACATGCTCGGCTGGCTCAGGAGAACCCGGCCCGACATCGACGGGCTCACCGGCTCCGAATCTAACCGGGTCAACGCATCCGACCCGAGCTCCCC...

Protein

1 records

Download Protein FASTA

XP_057772466.1
MGFLRLLHLRAAAVFLTYLLLSASVPLSSPKKTKHKINGPIKTFVVVVMENRSFDHMLGWLRRTRPDIDGLTGSESNRVNASDPSSPSVAVTDGAVFVESDPGHSIQAIREQIFGRNDTSAKPAPMDGFVQQAESMGVAGMAATVMSGFKPELVPVYTELANQFAVMDRWFASVPASTQPNRFYVHSATSHGASSNVRKDLIRGFPQKTIFDSLDENDLDFGIYYQNIPATLFFKSLRKLKNIVKFHSYALKFKLDALLG...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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