当前解析结果
SmilChr07G000854| 统一新 Gene ID | SmilChr07G000854 |
|---|---|
| 名称 | SmilChr07G000854 |
| 描述 | ABC transporter G family member 31 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6083207 - 6091922 / + |
| NCBI Gene ID | LOC130992027 |
|---|---|
| GeneID | 130992027 |
| locus_tag | - |
| NCBI Name | LOC130992027 |
| 原始查询 | SmilChr07G000854 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 31 |
| 产物 | ABC transporter G family member 31 |
| Arabidopsis | AT2G29940 (ABCG31)pleiotropic drug resistance 3 [Source:NCBI gene (formerly Entrezgene);Acc:817544] identity=71.5; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0609300 (OsPDR9)- identity=53.2; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992027 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772469.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057772469.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057772469.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057772469.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057772469.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6083528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr7:6083537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,C59,C64,C66,C85 |
Chr7:6083702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr7:6085759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B121,D11 |
Chr7:6086054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,B67 |
Chr7:6086599 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B50 |
Chr7:6086599 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B50 |
Chr7:6086679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C35,C46 |
Chr7:6086707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr7:6086724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,C64,C66,C85 |
Chr7:6087126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B38,B91,C37,C4 |
Chr7:6087214 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772469.1PF00005
ABC_tran 171-353 aa
PF19055
ABC2_membrane_7 387-438 aa
PF01061
ABC2_membrane 508-720 aa
PF08370
PDR_assoc 725-787 aa
PF00005
ABC_tran 853-1005 aa
PF19055
ABC2_membrane_7 1034-1101 aa
PF01061
ABC2_membrane 1151-1363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772469.1 |
Pfam | PF00005 |
ABC_tran | Domain | 171 | 353 | 1.5e-41 | 142.9 | ABC transporter |
XP_057772469.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 387 | 438 | 2.5e-15 | 57.0 | ABC-2 type transporter |
XP_057772469.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 508 | 720 | 3.3e-101 | 337.9 | ABC-2 type transporter |
XP_057772469.1 |
Pfam | PF08370 |
PDR_assoc | Family | 725 | 787 | 4.7e-24 | 84.6 | Plant PDR ABC transporter associated |
XP_057772469.1 |
Pfam | PF00005 |
ABC_tran | Domain | 853 | 1005 | 1.5e-41 | 142.9 | ABC transporter |
XP_057772469.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 1034 | 1101 | 2.5e-15 | 57.0 | ABC-2 type transporter |
XP_057772469.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1151 | 1363 | 3.3e-101 | 337.9 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。