Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000867`

染色体: Chr07 坐标: 6195776-6200154 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000867`
名称	SmilChr07G000867
描述	asparagine synthetase [glutamine-hydrolyzing]
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	6195776 - 6200154 / `-`

ID 对照

NCBI Gene ID	`LOC130992043`
GeneID	`130992043`
locus_tag	`-`
NCBI Name	`LOC130992043`
原始查询	`SmilChr07G000867`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	asparagine synthetase [glutamine-hydrolyzing]
产物	asparagine synthetase [glutamine-hydrolyzing]
Arabidopsis	`AT3G47340` (ASN1) glutamine-dependent asparagine synthase 1 [Source:NCBI gene (formerly Entrezgene);Acc:823888] identity=83.6; qcov=0.988; evalue=0; confidence=high
Rice	`Os06g0265000` (ASN) - identity=77.9; qcov=0.973; evalue=0; confidence=high
GO	GO:0004066 (asparagine synthase (glutamine-hydrolyzing) activity); GO:0005829 (cytosol); GO:0006529 (GO:0006529)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00733 (Asn_synthase); PF12481 (DUF3700); PF13522 (GATase_6); PF13537 (GATase_7)
InterPro	-
eggNOG	-
NR	GeneID:130992043

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057772488.1`
2	Cytosol	细胞质基质	0.20000	`XP_057772488.1`
3	Nucleus	细胞核	0.00000	`XP_057772488.1`
4	Chromosome	染色体	0.00000	`XP_057772488.1`
5	Centromere	着丝粒	0.00000	`XP_057772488.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:6196054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,A25,B114,B71,B88
`Chr7:6196066`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C42
`Chr7:6196114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:6196414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:6196663`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:6196687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,A25,B71,B88
`Chr7:6196691`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr7:6196834`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B111
`Chr7:6196834`	`GA`	`G`	1bp_deletion	CDS_variant	1	B111
`Chr7:6196855`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B31,C40
`Chr7:6197054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,B136
`Chr7:6197060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B25,B4,B64,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772488.1

587 aa

294

587

GATase_6

GATase_7

DUF3700

Asn_synthase

PF13522 GATase_6 1-169 aa PF13537 GATase_7 48-165 aa PF12481 DUF3700 112-201 aa PF00733 Asn_synthase 210-361 aa PF00733 Asn_synthase 359-511 aa

XP_057772489.1

587 aa

294

587

GATase_6

GATase_7

DUF3700

Asn_synthase

PF13522 GATase_6 1-169 aa PF13537 GATase_7 48-165 aa PF12481 DUF3700 112-201 aa PF00733 Asn_synthase 210-361 aa PF00733 Asn_synthase 359-511 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772488.1`	Pfam	`PF13522`	GATase_6	Domain	1	169	2.5e-51	174.9	Glutamine amidotransferase domain
`XP_057772488.1`	Pfam	`PF13537`	GATase_7	Domain	48	165	2.6e-38	131.5	Glutamine amidotransferase domain
`XP_057772488.1`	Pfam	`PF12481`	DUF3700	Domain	112	201	2.6e-11	44.2	Aluminium induced protein
`XP_057772488.1`	Pfam	`PF00733`	Asn_synthase	Domain	210	361	4.3e-86	290.5	Asparagine synthase
`XP_057772488.1`	Pfam	`PF00733`	Asn_synthase	Domain	359	511	4.3e-86	290.5	Asparagine synthase
`XP_057772489.1`	Pfam	`PF13522`	GATase_6	Domain	1	169	2.5e-51	174.9	Glutamine amidotransferase domain
`XP_057772489.1`	Pfam	`PF13537`	GATase_7	Domain	48	165	2.6e-38	131.5	Glutamine amidotransferase domain
`XP_057772489.1`	Pfam	`PF12481`	DUF3700	Domain	112	201	2.6e-11	44.2	Aluminium induced protein
`XP_057772489.1`	Pfam	`PF00733`	Asn_synthase	Domain	210	361	4.3e-86	290.5	Asparagine synthase
`XP_057772489.1`	Pfam	`PF00733`	Asn_synthase	Domain	359	511	4.3e-86	290.5	Asparagine synthase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916505.1
ATATTGATTAGTGCCTAAATCTATTTTACATCGAATATGGTATCTAATTTATTTTCTCTTAAAAAAAAACAACAAATGATGCAATCTAGTCAGTCTATAAGTAAAATACAAATCGAGTAATTAAGAAGGGACGAGTTTGAATTTCATCGACCCTAAATATACATTAATTAGTAGTATTATTTTTAAAGAAAACAAGAAAAGAAAAGAGAGTTTTCTTCCCCACCCCAAATTCCAGAAACTCCTATAAATAGAAGGTGATA...

XM_057916506.1
GGTGATACATGGCATCGATGCAGACGGTGAAGAACATAACTCATTCAATATCAGTGTTAGACGTGTTTGCATTTAAAAATGTGTGGAATTCTAGCGGTTTTGGGGTGCGCCGATGACTCTCAGGCCAAGAGAGTTCGCGTTCTCGAGCTTTCTCGCAGATTGAAGCACCGGGGCCCTGATTGGAGTGGATTGTATCAGCATGGAGATTTTTACCTGGCCCATCAGAGGCTAGCTATCGTCGATCCCGCCTCTGGGGATCA...

CDS

2 records

下载 CDS FASTA

LOC130992043
ATGTGTGGAATTCTAGCGGTTTTGGGGTGCGCCGATGACTCTCAGGCCAAGAGAGTTCGCGTTCTCGAGCTTTCTCGCAGATTGAAGCACCGGGGCCCTGATTGGAGTGGATTGTATCAGCATGGAGATTTTTACCTGGCCCATCAGAGGCTAGCTATCGTCGATCCCGCCTCTGGGGATCAACCTCTTTACAATGAAGACAAAAAGATTGTGGTCACGGTGAATGGTGAAATCTACAACCATGAGGAACTGAGGAAGCT...

Protein

2 records

下载 Protein FASTA

XP_057772488.1
MCGILAVLGCADDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIVDPASGDQPLYNEDKKIVVTVNGEIYNHEELRKLLPNHKFRTGSDCDVIAHLYEEYGEKFLDMLDGMFSFVLLDCRDNSFLVARDAIGITSLYIGWGLDGSIWISSELKGLHDECEHFEAFPPGHLYSSKSGGLKRWYNPPWFSEAIPSTPYDPLVLRRAFESAVIKRLMTDVPFGVLLSGGLDSSLVASITSRYMAGTKAAKQWGS...

XP_057772489.1
MCGILAVLGCADDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIVDPASGDQPLYNEDKKIVVTVNGEIYNHEELRKLLPNHKFRTGSDCDVIAHLYEEYGEKFLDMLDGMFSFVLLDCRDNSFLVARDAIGITSLYIGWGLDGSIWISSELKGLHDECEHFEAFPPGHLYSSKSGGLKRWYNPPWFSEAIPSTPYDPLVLRRAFESAVIKRLMTDVPFGVLLSGGLDSSLVASITSRYMAGTKAAKQWGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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