当前解析结果
SmilChr07G000874| 统一新 Gene ID | SmilChr07G000874 |
|---|---|
| 名称 | SmilChr07G000874 |
| 描述 | uncharacterized protein At5g39865 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6256732 - 6257748 / - |
| NCBI Gene ID | LOC130992048 |
|---|---|
| GeneID | 130992048 |
| locus_tag | - |
| NCBI Name | LOC130992048 |
| 原始查询 | SmilChr07G000874 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Glutaredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:835966]; symbol=AT5G58530; hit=AT5G58530; species=arabidopsis; confidence=medium |
| 产物 | Glutaredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:835966]; symbol=AT5G58530; hit=AT5G58530; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G58530 (AT5G58530)Glutaredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:835966] identity=42.9; qcov=1.18; evalue=4.81e-66; confidence=medium |
| Rice | Os01g0829400 (OsGRL2)- identity=46.6; qcov=0.982; evalue=4.74e-60; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00462 (Glutaredoxin); PF23733 (GRXCR1-2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992048 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772493.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057772493.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057772493.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772493.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772493.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6256902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr7:6256977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:6256982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:6256992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr7:6257060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr7:6257079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:6257139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr7:6257171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:6257209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:6257215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,D7 |
Chr7:6257249 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:6257300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,B75,C1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772493.1PF00462
Glutaredoxin 79-147 aa
PF23733
GRXCR1-2_C 178-223 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772493.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 79 | 147 | 1.8e-10 | 41.6 | Glutaredoxin |
XP_057772493.1 |
Pfam | PF23733 |
GRXCR1-2_C | Domain | 178 | 223 | 4.9e-17 | 62.3 | GRXCR1/2, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。