Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000912`

染色体: Chr07 坐标: 6512725-6515184 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000912`
名称	SmilChr07G000912
描述	protein GRAVITROPIC IN THE LIGHT 1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	6512725 - 6515184 / `+`

ID 对照

NCBI Gene ID	`LOC130992087`
GeneID	`130992087`
locus_tag	`-`
NCBI Name	`LOC130992087`
原始查询	`SmilChr07G000912`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein GRAVITROPIC IN THE LIGHT 1
产物	protein GRAVITROPIC IN THE LIGHT 1
Arabidopsis	`AT2G30380` (AT2G30380) MYB family transcription factor [Source:NCBI gene (formerly Entrezgene);Acc:28718318] identity=43.5; qcov=0.947; evalue=7.68e-104; confidence=medium
Rice	`Os01g0823700` - identity=35; qcov=0.996; evalue=8.99e-75; confidence=medium
GO	GO:0009639 (response to red or far red light); GO:0009959 (negative gravitropism)
KEGG	-
Pfam	PF04859 (DUF641); PF24994 (GIL1_IRKI_C)
InterPro	-
eggNOG	-
NR	GeneID:130992087

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057772542.1`
2	Cytosol	细胞质基质	0.40000	`XP_057772542.1`
3	Nucleus	细胞核	0.20000	`XP_057772542.1`
4	Chromosome	染色体	0.00000	`XP_057772542.1`
5	Centromere	着丝粒	0.00000	`XP_057772542.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:6513819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B100,B56,B96
`Chr7:6513880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:6513966`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,C2
`Chr7:6513974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B100,B56,B96
`Chr7:6513982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,C47,C48
`Chr7:6513990`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:6514025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,D10
`Chr7:6514026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr7:6514049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B46,C78
`Chr7:6514055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:6514074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B100,B56,B96
`Chr7:6514148`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B69,C27,C35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772542.1

456 aa

228

456

DUF641

GIL1_IRKI_C

PF04859 DUF641 101-213 aa PF24994 GIL1_IRKI_C 390-445 aa

XP_057772543.1

456 aa

228

456

DUF641

GIL1_IRKI_C

PF04859 DUF641 101-213 aa PF24994 GIL1_IRKI_C 390-445 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772542.1`	Pfam	`PF04859`	DUF641	Family	101	213	1.3e-21	78.0	Plant protein of unknown function (DUF641)
`XP_057772542.1`	Pfam	`PF24994`	GIL1_IRKI_C	Domain	390	445	3.2e-12	47.0	GIL1/IRKI C-terminal domain
`XP_057772543.1`	Pfam	`PF04859`	DUF641	Family	101	213	1.3e-21	78.0	Plant protein of unknown function (DUF641)
`XP_057772543.1`	Pfam	`PF24994`	GIL1_IRKI_C	Domain	390	445	3.2e-12	47.0	GIL1/IRKI C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916560.1
ATAAAATTTTCTTTTGAAATTTTATCAATGAAACTACAAAAGTACCCCTAACTCGAATTCGAAATTTTCTCCTTCTTCTCTGTTTGCGTGCAGTCGCAGTTCCCACAGTACACAGATTCCCTCCTGTTCTTTTTCTTCTCGAAAAACACACACACACGCCTGCTCGAAACGGCGTCGTAGCTGTGCCCCACGCACTGGGACGTGCAGTGCGTGTTGTCAGAGACCATGAGCACCACACTCAGATTCCAATTAAACAAACT...

XM_057916559.1
TAAAATTTTCTTTTGAAATTTTATCAATGAAACTACAAAAGTACCCCTAACTCGAATTCGAAATTTTCTCCTTCTTCTCTGTTTGCGTGCAGTCGCAGTTCCCACAGTACACAGATTCCCTCCTGTTCTTTTTCTTCTCGAAAAACACACACACACGCCTGCTCGAAACGGCGTCGTAGCTGTGCCCCACGCACTGGGACGTGCAGTGCGTGTTGTCAGAGACCATGAGCACCACACTCAGATTCCAATTAAACAAACTA...

CDS

2 records

下载 CDS FASTA

LOC130992087
ATGGGATTGGAGTCAGATAAGCAGGGGATGGAGTTTGCAGCTAGTTCCAAACCCCTTAAACCCCCTGCAAATATATCTGAAATCGTTTCAAAATTCGCCAAAGTTTGTAAATTTAGGTCCATTGGTGTATTTTATTCGTCGGAGAATGTGGACCAAAGCCATGTTTACCCGATGATTTCTGGCGACAATGCTCGTCTATTGGATGAAGAAAGTGGCGAAGATGTTCTTTTTTGTGCCAAGAAAATCTTTCCTGAGCATGC...

Protein

2 records

下载 Protein FASTA

XP_057772542.1
MGLESDKQGMEFAASSKPLKPPANISEIVSKFAKVCKFRSIGVFYSSENVDQSHVYPMISGDNARLLDEESGEDVLFCAKKIFPEHAEVQKSGNLCARVELVQLFDTLLALKIAYVKLQEAHIPYDPEKVRVADEEVMLQIDTLGKIKKAYKEKQLKEANAVSAGSALFLAEVKVKEQQLEKLKSQAKIKGKRVANLSKKLQELETKNKKLAEEIEERERERFAGLNHYSLENVVRAVGKAIHDFAKPLIALMKHSDWDL...

XP_057772543.1
MGLESDKQGMEFAASSKPLKPPANISEIVSKFAKVCKFRSIGVFYSSENVDQSHVYPMISGDNARLLDEESGEDVLFCAKKIFPEHAEVQKSGNLCARVELVQLFDTLLALKIAYVKLQEAHIPYDPEKVRVADEEVMLQIDTLGKIKKAYKEKQLKEANAVSAGSALFLAEVKVKEQQLEKLKSQAKIKGKRVANLSKKLQELETKNKKLAEEIEERERERFAGLNHYSLENVVRAVGKAIHDFAKPLIALMKHSDWDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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