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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000934

染色体: Chr07 坐标: 6668416-6670942 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000934
名称SmilChr07G000934
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向6668416 - 6670942 / -

ID 对照

NCBI Gene IDLOC130992128
GeneID130992128
locus_tag-
NCBI NameLOC130992128
原始查询SmilChr07G000934

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=41.1; qcov=0.866; evalue=1.36e-141; confidence=medium
RiceOs08g0107800
-
identity=32.5; qcov=0.864; evalue=2.82e-89; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130992128

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057772621.1
2 Chloroplast 叶绿体 0.20000 XP_057772621.1
3 Nucleus 细胞核 0.00000 XP_057772621.1
4 Chromosome 染色体 0.00000 XP_057772621.1
5 Centromere 着丝粒 0.00000 XP_057772621.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:6669119 G A EMS_canonical_SNV stop_gained 5 A14,B119,B49,B79,C36
Chr7:6669119 G A EMS_canonical_SNV CDS_variant 5 A14,B119,B49,B79,C36
Chr7:6669262 C T EMS_canonical_SNV CDS_variant 3 B125,B140,B80
Chr7:6669311 G A EMS_canonical_SNV CDS_variant 5 C18,C2,C53,C60,D10
Chr7:6669315 C T EMS_canonical_SNV CDS_variant 5 C18,C2,C53,C60,D10
Chr7:6669364 C T EMS_canonical_SNV CDS_variant 5 A5,B104,C38,C51,D11
Chr7:6669374 G A EMS_canonical_SNV CDS_variant 1 B68
Chr7:6669415 TCC T 2bp_deletion frameshift_variant 27 A16,B1,B101,B102,B113,B130,B138,B18,B22,B23,B25,B34,B35,B66,B67,B87,B95,C18,C2,C39,C44,C45,C53,C60,D10,D3,D6
Chr7:6669566 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:6669575 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:6669617 C T EMS_canonical_SNV CDS_variant 3 B111,B39,C68
Chr7:6669644 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772621.1
588 aa
N
1
294
588
PPR_2
PPR_1
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR
C
PF13041 PPR_2 96-145 aa PF12854 PPR_1 163-195 aa PF01535 PPR 169-194 aa PF12854 PPR_1 196-224 aa PF13812 PPR_3 196-243 aa PF13041 PPR_2 199-247 aa PF01535 PPR 201-227 aa PF12854 PPR_1 231-259 aa PF13041 PPR_2 233-282 aa PF01535 PPR 238-259 aa PF17177 PPR_long 250-363 aa PF13812 PPR_3 257-316 aa PF12854 PPR_1 266-297 aa PF13041 PPR_2 268-317 aa PF01535 PPR 271-299 aa PF13812 PPR_3 293-350 aa PF12854 PPR_1 301-332 aa PF01535 PPR 306-336 aa PF13041 PPR_2 310-350 aa PF23276 TPR_24 310-397 aa PF13812 PPR_3 327-387 aa PF12854 PPR_1 334-364 aa PF13041 PPR_2 338-387 aa PF01535 PPR 341-370 aa PF12854 PPR_1 370-398 aa PF13041 PPR_2 373-420 aa PF01535 PPR 377-405 aa PF13812 PPR_3 403-453 aa PF23276 TPR_24 403-504 aa PF12854 PPR_1 405-437 aa PF13041 PPR_2 409-456 aa PF01535 PPR 411-437 aa PF17177 PPR_long 427-522 aa PF12854 PPR_1 441-472 aa PF13041 PPR_2 443-492 aa PF01535 PPR 446-476 aa PF13812 PPR_3 467-528 aa PF12854 PPR_1 475-505 aa PF13041 PPR_2 478-526 aa PF01535 PPR 481-511 aa PF12854 PPR_1 509-541 aa PF13041 PPR_2 515-560 aa PF01535 PPR 516-546 aa PF12854 PPR_1 544-576 aa PF01535 PPR 551-580 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 96 145 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 163 195 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF01535 PPR Repeat 169 194 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 196 224 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 196 243 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 199 247 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 201 227 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 231 259 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 233 282 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 238 259 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF17177 PPR_long Repeat 250 363 6e-28 98.4 Pentacotripeptide-repeat region of PRORP
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 257 316 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 266 297 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 268 317 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 271 299 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 293 350 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 301 332 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF01535 PPR Repeat 306 336 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 310 350 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF23276 TPR_24 Repeat 310 397 4.3e-25 88.9 Pentatricopeptide repeat-containing protein
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 327 387 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 334 364 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 338 387 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 341 370 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 370 398 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 373 420 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 377 405 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 403 453 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF23276 TPR_24 Repeat 403 504 4.3e-25 88.9 Pentatricopeptide repeat-containing protein
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 405 437 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 409 456 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 411 437 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF17177 PPR_long Repeat 427 522 6e-28 98.4 Pentacotripeptide-repeat region of PRORP
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 441 472 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 443 492 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 446 476 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF13812 PPR_3 Repeat 467 528 7.4e-60 199.6 Pentatricopeptide repeat domain
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 475 505 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 478 526 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 481 511 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 509 541 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF13041 PPR_2 Repeat 515 560 3.8e-148 482.3 PPR repeat family
XP_057772621.1 Pfam PF01535 PPR Repeat 516 546 2e-91 294.8 PPR repeat
XP_057772621.1 Pfam PF12854 PPR_1 Repeat 544 576 1.4e-124 406.1 PPR repeat
XP_057772621.1 Pfam PF01535 PPR Repeat 551 580 2e-91 294.8 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916638.1
AATTGAACTTTTACATATTAAAAACCAAAAAAAAAAAAAGAGGAAACCTAATCTCCTACAAGGCTACAACTTAAAGAAATCCACTCGAGAATAGTCGAATCTCGCTCGCCGCCATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAAATCTTCCACTTTTCACATTGCTTCTCTACCTTTTCACTCATTTCCACCTCTACCCACATCCAATTTTCATAATGTCAGCCGCCAAATCCAAATGAGGCACTTTTCCCGC...

CDS

1 records

下载 CDS FASTA
LOC130992128
ATGGATTTCCAAAGAATTATCTTCAATTCTTCATTCAAATCTTCCACTTTTCACATTGCTTCTCTACCTTTTCACTCATTTCCACCTCTACCCACATCCAATTTTCATAATGTCAGCCGCCAAATCCAAATGAGGCACTTTTCCCGCAAACCCAGATCCAATTTTGATAATGTCAGCCACCGAATGAGCCAACTTTCCGGCAAACCCAGATTCGATTTCGGATCTCTGCGTGAGCCAGATGATGCTATAGCTCTATTTGA...

Protein

1 records

下载 Protein FASTA
XP_057772621.1
MDFQRIIFNSSFKSSTFHIASLPFHSFPPLPTSNFHNVSRQIQMRHFSRKPRSNFDNVSHRMSQLSGKPRFDFGSLREPDDAIALFEEMVRMHPRPSVIDFNKCLSAVVKMKQHSVALHLFVKMLRSDVPVNHYTLNIAINCCCRLKRPDCGFAILGSFFKLGHEPDVVTFTTLIRGLVLVGKIVEAAKLLEKMSVEANVVTYNTVLNGLCKAGHTFEALDLLRLWEKGSCKPDVIGYSTIIDRLCKDGMVDDALQLFST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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