Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000938

染色体: Chr07 坐标: 6691886-6697347 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000938
名称SmilChr07G000938
描述MLO-like protein 1
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向6691886 - 6697347 / -

ID 对照

NCBI Gene IDLOC130992132
GeneID130992132
locus_tag-
NCBI NameLOC130992132
原始查询SmilChr07G000938

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述MLO-like protein 1
产物MLO-like protein 1
ArabidopsisAT4G02600 (MLO1)
Seven transmembrane MLO family protein [Source:NCBI gene (formerly Entrezgene);Acc:828229]
identity=73; qcov=0.945; evalue=0; confidence=high
RiceOs01g0888600 (OsMLO5)
-
identity=64.1; qcov=0.953; evalue=0; confidence=high
GOGO:0006952 (defense response); GO:0016020 (membrane)
KEGG-
PfamPF03094 (Mlo)
InterPro-
eggNOG-
NRGeneID:130992132

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057772636.1
2 Nucleus 细胞核 0.00000 XP_057772636.1
3 Chromosome 染色体 0.00000 XP_057772636.1
4 Centromere 着丝粒 0.00000 XP_057772636.1
5 Chromatin 染色质 0.00000 XP_057772636.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:6692192 G A EMS_canonical_SNV CDS_variant 4 B62,B90,B92,C21
Chr7:6692209 G A EMS_canonical_SNV CDS_variant 1 B136
Chr7:6692225 G A EMS_canonical_SNV CDS_variant 2 B25,C16
Chr7:6692308 C T EMS_canonical_SNV CDS_variant 1 C60
Chr7:6692325 C T EMS_canonical_SNV CDS_variant 1 B2
Chr7:6692350 C T EMS_canonical_SNV CDS_variant 1 B13
Chr7:6692511 G A EMS_canonical_SNV stop_gained 127 A11,A13,A14,A2,A20,A21,A22,A25,A5,A6,A7,A9,B10,B100,B103,B104,B107,B109,B11,B110,B112,B113,B114,B115,B118,B119,B120,B123,B126,B128,B129,B13,B130,B131,B132,B133,B134,B140,B15,B16,B17,B2,B20,B24,B25,B3,B31,B33,B34,B35,B36,B39,B4,B40,B41,B43,B45,B48,B50,B51,B54,B58,B61,B65,B68,B75,B77,B78,B79,B8,B81,B82,B85,B89,B9,B91,B92,B93,B96,B97,C11,C12,C13,C14,C15,C16,C18,C19,C23,C27,C29,C3,C30,C31,C36,C38,C4,C40,C42,C43,C44,C45,C47,C49,C51,C52,C53,C55,C57,C59,C6,C64,C66,C69,C71,C72,C79,C81,C83,C86,C87,D2,D3,D5,D6,D7,D9
Chr7:6692904 G A EMS_canonical_SNV CDS_variant 5 B107,B18,B23,C53,C54
Chr7:6693722 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:6695841 C T EMS_canonical_SNV CDS_variant 2 B40,B47
Chr7:6695868 G A EMS_canonical_SNV CDS_variant 1 D7
Chr7:6695881 C T EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772636.1
518 aa
N
1
259
518
Mlo
C
PF03094 Mlo 9-472 aa
XP_057772637.1
509 aa
N
1
254
509
Mlo
C
PF03094 Mlo 9-463 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772636.1 Pfam PF03094 Mlo Family 9 472 1.6e-185 617.9 Mlo family
XP_057772637.1 Pfam PF03094 Mlo Family 9 463 3.7e-190 633.1 Mlo family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916654.1
CCTTGATTTGAAAACAAAAAACATAGAGGTTTTTGAATCAGATTCTCTTTCTTTTTTTCTTTTTCCTTTTCGTTTTGGATATACTCCAATTTAAAGTGAGCTAGAAAAATTCTCAATTAATGTTACGTGCTTTAATTTAAAAAAAATATTTTTACTCAGCTCCACATTAGTTAGATGAACCAGACGTCCTACCAAAAATAAAAATAAAACTTACGATTTATATTTTCATAGAAAGTCAAAAAAGATAAAAAGAAAAGCGC...
XM_057916653.1
ACTTTCTCAAACCAAACAGCCTCTATGGTTAGTCACAAACTGTTATAATCGCGAAACTACTCCAGCAATTAACGCTAGAAATCTCGCCAGCATTAACTCAGATTAATTGGACTCCATTATTATATCAGACTTGTCTCAATCTGCGCTTTATCTTGAGCGCGTCGAATCGCCATTTCGTAGTTTATTAACCAGAATCACGACCACACCACTATTTTTATTCATCTAGAAATCTCTATGCTTTCTGCCTCTTTTTGGCCTTT...

CDS

2 records

下载 CDS FASTA
LOC130992132
ATGGCTGGCGGGGAAGGAGAAGGGACCAGCTTGGAGTTCACTCCGACGTGGGTGGTCGCCGCCGTGTGCACGGTTATCGTCGCCATTTCTCTCGCCGTTGAACGCTTCATTCACTACACTGGAAAGTATTTGAAGAAAAAGAAACAAAAGCCACTCTATGAAGCTGTACAGAAAGTTAAAGAAGAACTGATGCTGCTGGGGTTCATATCTCTTATGATGACTGTATTTCAAGCCCGTATAGTGAAGATCTGTGTGAATCC...
LOC130992132
ATGGCTGGCGGGGAAGGAGAAGGGACCAGCTTGGAGTTCACTCCGACGTGGGTGGTCGCCGCCGTGTGCACGGTTATCGTCGCCATTTCTCTCGCCGTTGAACGCTTCATTCACTACACTGGAAAGAATCAATGCTTGCGAAAAAATGTGCAGTATTTGAAGAAAAAGAAACAAAAGCCACTCTATGAAGCTGTACAGAAAGTTAAAGAAGAACTGATGCTGCTGGGGTTCATATCTCTTATGATGACTGTATTTCAAGC...

Protein

2 records

下载 Protein FASTA
XP_057772636.1
MAGGEGEGTSLEFTPTWVVAAVCTVIVAISLAVERFIHYTGKNQCLRKNVQYLKKKKQKPLYEAVQKVKEELMLLGFISLMMTVFQARIVKICVNPGVMDDFLPCSLSVRPSSGGEGSNATHSAPEVSGAHRRLLAEEAAVGGYCAAKNKVPMLSLEALHHLHIFIFVLAIVHVTFSVLTIVFGGAKIRQWKHWEDSISKDSFDLDHALKHKVTRVQDHDFIKKRFLGVGKNSAILGWLHSFFKQFYASVTKSDYAALRL...
XP_057772637.1
MAGGEGEGTSLEFTPTWVVAAVCTVIVAISLAVERFIHYTGKYLKKKKQKPLYEAVQKVKEELMLLGFISLMMTVFQARIVKICVNPGVMDDFLPCSLSVRPSSGGEGSNATHSAPEVSGAHRRLLAEEAAVGGYCAAKNKVPMLSLEALHHLHIFIFVLAIVHVTFSVLTIVFGGAKIRQWKHWEDSISKDSFDLDHALKHKVTRVQDHDFIKKRFLGVGKNSAILGWLHSFFKQFYASVTKSDYAALRLGFITTHCRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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