当前解析结果
SmilChr07G000939| 统一新 Gene ID | SmilChr07G000939 |
|---|---|
| 名称 | SmilChr07G000939 |
| 描述 | auxilin-related protein 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6700792 - 6707459 / - |
| NCBI Gene ID | LOC130992106 |
|---|---|
| GeneID | 130992106 |
| locus_tag | - |
| NCBI Name | LOC130992106 |
| 原始查询 | SmilChr07G000939 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxilin-related protein 2-like |
| 产物 | auxilin-related protein 2-like |
| Arabidopsis | AT4G12770 (AT4G12770)Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826889] identity=44.2; qcov=1.07; evalue=2.63e-169; confidence=medium |
| Rice | Os01g0355500 (OsDjC5)- identity=73.9; qcov=0.243; evalue=8.86e-98; confidence=weak |
| GO | GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992106 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 0.80000 | XP_057772587.1 |
| 2 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057772587.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057772587.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057772587.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057772587.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6701909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B6,C67 |
Chr7:6702682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr7:6702699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B18,B23,C53,C54 |
Chr7:6702921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,C38,C51 |
Chr7:6703173 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:6703831 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B97,C32,C68,C8 |
Chr7:6703945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C42 |
Chr7:6703958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr7:6704177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:6704225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,B140,D7 |
Chr7:6704303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:6704359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B113,B130,B84,C18,C45 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。