当前解析结果
SmilChr07G000964| 统一新 Gene ID | SmilChr07G000964 |
|---|---|
| 名称 | SmilChr07G000964 |
| 描述 | uncharacterized SmilChr07G000964 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 6953033 - 6954668 / - |
| NCBI Gene ID | LOC130992179 |
|---|---|
| GeneID | 130992179 |
| locus_tag | - |
| NCBI Name | LOC130992179 |
| 原始查询 | SmilChr07G000964 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | D-ribose-binding periplasmic protein [Source:NCBI gene (formerly Entrezgene);Acc:835073]; symbol=AT5G50090; hit=AT5G50090; species=arabidopsis; confidence=medium |
| 产物 | D-ribose-binding periplasmic protein [Source:NCBI gene (formerly Entrezgene);Acc:835073]; symbol=AT5G50090; hit=AT5G50090; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G50090 (AT5G50090)D-ribose-binding periplasmic protein [Source:NCBI gene (formerly Entrezgene);Acc:835073] identity=49.7; qcov=1; evalue=1.11e-49; confidence=medium |
| Rice | Os08g0420700- identity=39.7; qcov=1.12; evalue=3.23e-40; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF14009 (PADRE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992179 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057772709.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057772710.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057772709.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057772709.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772709.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:6953778 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B121,C87 |
Chr7:6953778 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B121,C87 |
Chr7:6953779 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,C87 |
Chr7:6953802 |
A |
AT |
1bp_insertion | frameshift_variant | 18 | B117,B123,B128,B130,B136,B138,B2,B27,B31,B46,B59,B72,B73,C16,C40,C58,C77,C78 |
Chr7:6953804 |
AT |
A |
1bp_deletion | frameshift_variant | 27 | B106,B107,B114,B132,B134,B139,B140,B25,B30,B34,B44,B85,B90,B92,C13,C24,C25,C31,C35,C37,C44,C48,C62,C73,C9,D11,D8 |
Chr7:6953805 |
T |
TA |
1bp_insertion | frameshift_variant | 12 | B104,B134,B139,B68,B86,B90,B92,C21,C25,C37,C73,D6 |
Chr7:6953844 |
GA |
G |
1bp_deletion | frameshift_variant | 181 | A1,A10,A13,A14,A15,A18,A19,A2,A21,A24,A25,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B104,B105,B107,B110,B111,B112,B113,B114,B115,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B131,B132,B134,B135,B137,B138,B139,B14,B140,B15,B2,B20,B21,B22,B23,B24,B26,B28,B29,B3,B30,B31,B33,B35,B37,B4,B40,B41,B42,B43,B44,B45,B46,B48,B49,B5,B50,B51,B52,B53,B55,B56,B57,B6,B61,B64,B65,B66,B67,B68,B69,B7,B71,B74,B75,B76,B78,B79,B8,B80,B81,B82,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B97,B98,C10,C12,C14,C15,C16,C17,C2,C20,C21,C24,C25,C26,C27,C29,C3,C30,C32,C34,C35,C36,C37,C38,C4,C41,C43,C44,C45,C48,C5,C50,C51,C53,C55,C56,C57,C58,C6,C60,C63,C64,C66,C67,C68,C70,C71,C72,C73,C76,C79,C82,C83,C84,C9,D1,D10,D11,D3,D4,D5,D6,D7,D8 |
Chr7:6953862 |
G |
GT |
1bp_insertion | frameshift_variant | 171 | A1,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A25,A3,A4,A5,A8,A9,B1,B10,B100,B101,B103,B106,B107,B108,B109,B11,B112,B114,B117,B12,B120,B121,B122,B123,B125,B129,B13,B130,B131,B132,B133,B135,B137,B138,B139,B14,B16,B17,B18,B19,B21,B23,B24,B26,B27,B28,B3,B31,B32,B33,B34,B35,B37,B39,B4,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B53,B54,B55,B56,B59,B60,B62,B64,B66,B68,B69,B7,B71,B72,B73,B74,B77,B80,B81,B83,B86,B87,B9,B93,B94,B95,B96,B97,B99,C1,C10,C13,C14,C16,C17,C18,C19,C2,C22,C23,C26,C28,C29,C30,C31,C33,C35,C38,C39,C4,C40,C41,C43,C44,C45,C47,C49,C5,C51,C52,C53,C54,C58,C59,C60,C62,C65,C69,C7,C71,C72,C74,C75,C76,C77,C78,C8,C81,C82,C83,C85,C86,C87,C9,D10,D11,D3,D4,D5,D6,D8,D9 |
Chr7:6953863 |
T |
TA |
1bp_insertion | frameshift_variant | 29 | A3,A5,A7,A8,B106,B110,B112,B122,B23,B3,B33,B78,B8,B81,B82,B85,B98,C27,C34,C48,C50,C58,C70,C72,C79,C80,C81,D2,D5 |
Chr7:6953868 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | B113,B130,B140,B77,B84,C18,C63 |
Chr7:6953869 |
T |
TG |
1bp_insertion | frameshift_variant | 42 | A11,A23,B104,B109,B11,B120,B133,B16,B17,B25,B36,B4,B40,B48,B52,B57,B58,B6,B62,B63,B70,B83,B90,B92,C21,C28,C33,C40,C46,C49,C52,C56,C61,C64,C65,C66,C67,C75,C83,C85,D2,D8 |
Chr7:6953881 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772709.1PF14009
PADRE 1-133 aa
XP_057772710.1PF14009
PADRE 1-166 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772709.1 |
Pfam | PF14009 |
PADRE | Domain | 1 | 133 | 9.4e-21 | 75.7 | PADRE domain |
XP_057772710.1 |
Pfam | PF14009 |
PADRE | Domain | 1 | 166 | 2.3e-27 | 97.3 | PADRE domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。