Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000967`

染色体: Chr07 坐标: 7001635-7002936 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000967`
名称	SmilChr07G000967
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7001635 - 7002936 / `-`

ID 对照

NCBI Gene ID	`LOC130993761`
GeneID	`130993761`
locus_tag	`-`
NCBI Name	`LOC130993761`
原始查询	`SmilChr07G000967`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT3G50950` (ZAR1) HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=35.6; qcov=0.552; evalue=4.21e-30; confidence=medium
Rice	`Os08g0424700` (P0456B03.103) - identity=40; qcov=0.52; evalue=1.47e-37; confidence=medium
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF23559 (WHD_DRP)
InterPro	-
eggNOG	-
NR	GeneID:130993761

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057774782.1`
2	Nucleus	细胞核	0.00000	`XP_057774782.1`
3	Chromosome	染色体	0.00000	`XP_057774782.1`
4	Centromere	着丝粒	0.00000	`XP_057774782.1`
5	Chromatin	染色质	0.00000	`XP_057774782.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7001636`	`C`	`CTG`	2bp_insertion	frameshift_variant	121	A1,A10,A11,A18,A2,A20,A23,A24,A25,A3,A8,B1,B103,B107,B108,B109,B11,B110,B111,B112,B115,B118,B12,B120,B124,B125,B129,B130,B134,B137,B139,B14,B18,B19,B20,B22,B3,B30,B31,B32,B36,B37,B38,B39,B4,B41,B42,B43,B45,B47,B5,B50,B52,B53,B54,B56,B57,B59,B6,B60,B65,B67,B68,B7,B70,B72,B75,B76,B77,B79,B80,B82,B83,B86,B87,B9,B90,B92,B94,B95,B96,B97,B98,B99,C11,C12,C13,C16,C19,C20,C21,C23,C3,C30,C33,C34,C36,C38,C42,C44,C45,C46,C51,C52,C53,C54,C55,C58,C60,C61,C65,C67,C69,C70,C73,C78,C83,C84,C86,C9,D6
`Chr7:7001638`	`CAG`	`C`	2bp_deletion	frameshift_variant	106	A1,A10,A18,A2,A20,A24,A25,A3,A8,B1,B102,B103,B104,B107,B108,B11,B110,B111,B112,B118,B12,B124,B125,B129,B130,B134,B137,B139,B14,B15,B18,B22,B3,B30,B31,B36,B39,B42,B43,B45,B47,B5,B50,B53,B56,B59,B6,B62,B65,B68,B7,B70,B72,B76,B77,B79,B80,B82,B83,B86,B87,B90,B92,B94,B95,B96,B97,B98,C11,C12,C13,C16,C20,C21,C23,C25,C3,C30,C33,C34,C36,C38,C39,C4,C42,C44,C45,C46,C51,C53,C54,C55,C56,C58,C60,C67,C69,C70,C73,C78,C79,C8,C83,C84,C86,D6
`Chr7:7001739`	`GCC`	`G`	2bp_deletion	frameshift_variant	130	A1,A13,A15,A16,A18,A2,A21,A23,A25,A3,A6,A8,B1,B10,B100,B102,B103,B104,B105,B106,B107,B108,B109,B11,B118,B119,B120,B121,B124,B125,B127,B129,B130,B131,B132,B133,B136,B137,B140,B16,B17,B18,B21,B22,B25,B26,B27,B3,B30,B31,B32,B33,B36,B37,B4,B43,B47,B53,B57,B59,B6,B60,B62,B66,B68,B70,B71,B75,B77,B78,B79,B8,B80,B82,B84,B85,B86,B87,B88,B89,B90,B92,B93,B94,B95,B98,C10,C11,C12,C15,C22,C23,C24,C27,C28,C29,C3,C35,C37,C38,C4,C43,C44,C45,C46,C47,C48,C51,C55,C56,C57,C58,C6,C62,C68,C69,C73,C77,C78,C79,C80,C81,C84,C87,C9,D11,D3,D4,D7,D9
`Chr7:7001808`	`ACT`	`A`	2bp_deletion	frameshift_variant	3	A21,B101,B13
`Chr7:7001808`	`ACT`	`A`	2bp_deletion	CDS_variant	3	A21,B101,B13
`Chr7:7001890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:7001930`	`GTC`	`G`	2bp_deletion	frameshift_variant	86	A11,A2,A22,A23,A3,A5,A7,A8,B109,B110,B115,B117,B118,B119,B120,B122,B127,B131,B135,B140,B15,B19,B2,B20,B23,B24,B32,B37,B4,B40,B41,B47,B49,B50,B52,B54,B56,B57,B58,B60,B62,B67,B73,B75,B81,B86,B9,B93,B96,B99,C1,C10,C19,C2,C22,C26,C28,C39,C40,C43,C47,C48,C49,C52,C58,C6,C61,C63,C64,C65,C66,C70,C72,C74,C75,C77,C79,C80,C82,C85,C9,D11,D2,D3,D5,D7
`Chr7:7001978`	`TC`	`T`	1bp_deletion	frameshift_variant	19	A2,A20,B109,B113,B129,B44,B46,B57,B62,B79,B82,C17,C31,C4,C56,C61,C75,D1,D10
`Chr7:7002021`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B117,B36,B42,B43,B79,B9,C45
`Chr7:7002028`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	B117,B36,B42,B43,B79,C45
`Chr7:7002041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	C1,C28,C43,C47,D3
`Chr7:7002063`	`A`	`AG`	1bp_insertion	frameshift_variant	25	A25,B101,B106,B124,B24,B28,B30,B4,B51,B57,B67,B71,B82,B86,C15,C16,C23,C28,C37,C43,C53,C57,C68,C72,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774782.1

346 aa

173

346

WHD_DRP

PF23559 WHD_DRP 108-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774782.1`	Pfam	`PF23559`	WHD_DRP	Domain	108	178	1.6e-20	73.6	Disease resistance protein Winged helix domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918799.1
ATGAAGAAACCCCTAGATGAGGATACAAGTTGGGAATTGTTTTGTAAAAAGGCATTCCAACAAGAAAATTGCCCTTATCCTCAACTTGAGAAAGTTGGAAAGGAGATTGCTAGATTGTGCAGTGGACTACCCTTGTCCACTGTTGTGATTGGAGGCCTTCTTCTCAACTCAACTAGGTCTCTACAATTCTGGGAGAATGTTGTTAGAAATATAAAATCAAGTCCTATTGCAAAAGAAAAAGAAGAAAGCTTGGATATATT...

CDS

1 records

下载 CDS FASTA

LOC130993761
ATGAAGAAACCCCTAGATGAGGATACAAGTTGGGAATTGTTTTGTAAAAAGGCATTCCAACAAGAAAATTGCCCTTATCCTCAACTTGAGAAAGTTGGAAAGGAGATTGCTAGATTGTGCAGTGGACTACCCTTGTCCACTGTTGTGATTGGAGGCCTTCTTCTCAACTCAACTAGGTCTCTACAATTCTGGGAGAATGTTGTTAGAAATATAAAATCAAGTCCTATTGCAAAAGAAAAAGAAGAAAGCTTGGATATATT...

Protein

1 records

下载 Protein FASTA

XP_057774782.1
MKKPLDEDTSWELFCKKAFQQENCPYPQLEKVGKEIARLCSGLPLSTVVIGGLLLNSTRSLQFWENVVRNIKSSPIAKEKEESLDILSLSYNHLPPHLKPCFLYMGAFKEDSEIRVSKIIKLWIAEGFVRPKGAQILEEVAEGYLKELIDRNLLSIRNHRHNGKIRSCGVHDLVRDLCLKVVSKLPSSVSNMWNMQSLIVILYRSARVVVAPIEIWKMRQLRHVKCSQIYVPDPPPRSNGLLMMDNLQTLTRAVNLRLSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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