Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000973

染色体: Chr07 坐标: 7055337-7063126 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000973
名称SmilChr07G000973
描述uncharacterized SmilChr07G000973
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向7055337 - 7063126 / +

ID 对照

NCBI Gene IDLOC130992101
GeneID130992101
locus_tag-
NCBI NameLOC130992101
原始查询SmilChr07G000973

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein SUO [Source:NCBI gene (formerly Entrezgene);Acc:823960]; symbol=SUO; hit=AT3G48050; species=arabidopsis; confidence=medium
产物protein SUO [Source:NCBI gene (formerly Entrezgene);Acc:823960]; symbol=SUO; hit=AT3G48050; species=arabidopsis; confidence=medium
ArabidopsisAT3G48050 (SUO)
protein SUO [Source:NCBI gene (formerly Entrezgene);Acc:823960]
identity=43.2; qcov=1.04; evalue=0; confidence=medium
RiceOs02g0742000 (P0585G03.15-1)
-
identity=45.8; qcov=0.491; evalue=5.96e-177; confidence=medium
GOGO:0003682 (chromatin binding); GO:0005634 (nucleus)
KEGG-
PfamPF01426 (BAH); PF08711 (Med26)
InterPro-
eggNOG-
NRGeneID:130992101

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057772575.1
2 Chromosome 染色体 0.00000 XP_057772575.1
3 Centromere 着丝粒 0.00000 XP_057772575.1
4 Chromatin 染色质 0.00000 XP_057772575.1
5 Telomere 端粒 0.00000 XP_057772575.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:7056075 C T EMS_canonical_SNV CDS_variant 1 C46
Chr7:7056088 C T EMS_canonical_SNV CDS_variant 2 B38,B39
Chr7:7056713 C T EMS_canonical_SNV CDS_variant 1 B93
Chr7:7057373 G A EMS_canonical_SNV CDS_variant 2 C2,D4
Chr7:7057855 TGG T 2bp_deletion frameshift_variant 1 B54
Chr7:7057855 TGG T 2bp_deletion CDS_variant 1 B54
Chr7:7057925 C T EMS_canonical_SNV CDS_variant 1 C7
Chr7:7057926 G A EMS_canonical_SNV CDS_variant 3 B100,B133,C83
Chr7:7057970 G A EMS_canonical_SNV CDS_variant 1 C55
Chr7:7058173 G A EMS_canonical_SNV CDS_variant 1 A14
Chr7:7058270 C T EMS_canonical_SNV CDS_variant 3 A19,B63,B86
Chr7:7058510 G A EMS_canonical_SNV CDS_variant 2 C2,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772575.1
1647 aa
N
1
824
1647
BAH
Med26
C
PF01426 BAH 62-172 aa PF08711 Med26 388-437 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772575.1 Pfam PF01426 BAH Domain 62 172 5.4e-09 36.7 BAH domain
XP_057772575.1 Pfam PF08711 Med26 Domain 388 437 1.4e-13 51.1 TFIIS helical bundle-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009091248.1
AAAATAGACCGCTACGCTTATGCCGAGTCGTCACGACATCGTTTTTCCTTTTCTTCTCTTTCCCTCCCCTCCCCCTTTCTCTCTCTATACGTACAGCCTCCTATCTCTATATCTCGCCGCTTTCTCTCTCTCAAACCTCTCGCTGTGTCTTTGATTGGGAAAAACTCCGCAGGTTACGGGATCCGGGAATAGAAGCCCTAGAAATGAAATAAAGCGGAATAAATAGGGGCTTTTGCGAATTGGACCGATCTAGGGTTTTT...
XR_009091249.1
AAAATAGACCGCTACGCTTATGCCGAGTCGTCACGACATCGTTTTTCCTTTTCTTCTCTTTCCCTCCCCTCCCCCTTTCTCTCTCTATACGTACAGCCTCCTATCTCTATATCTCGCCGCTTTCTCTCTCTCAAACCTCTCGCTGTGTCTTTGATTGGGAAAAACTCCGCAGGTTACGGGATCCGGGAATAGAAGCCCTAGAAATGAAATAAAGCGGAATAAATAGGGGCTTTTGCGAATTGGACCGATCTAGGGTTTTT...

CDS

1 records

下载 CDS FASTA
LOC130992101
ATGCATGGGAGGGTTCAGCGGGACAGCGAGAGCTGTAAGAGTTTGCGGAGGAGTAATAGTCAGCACATGCGGCCAGTCCTTCCATCGGCGACAACTGTAACTGCCGCAGGTGATAATCATTCTCCTATTGCTTCTTCCATCACGACCTCCACCACTGGCGGTTCTTTCTTCAAGGACGGTCGCAAATTTACTGTTGGTGATTGTGCTCTTTTCAAGCCACCTAAAAATTCCCCTCCGTCCATTGGATTAATTCGCTGGTT...

Protein

1 records

下载 Protein FASTA
XP_057772575.1
MHGRVQRDSESCKSLRRSNSQHMRPVLPSATTVTAAGDNHSPIASSITTSTTGGSFFKDGRKFTVGDCALFKPPKNSPPSIGLIRWLAFDKENILKLGVNWLYRSSELKLGKGHLLDTAPNEIFYSFHKDETSAAYLLHPCKVAFLPRGVELPVGTAAFVCRRAYDISNKRLWWLTDQDCINEQQEEVDKLLFKTKTEMHVTLQPGGRSPKQVNGPTSTSQLKSAPDGGQNNGNSFHSQARGKKRERGDHGADPIKRERS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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