当前解析结果
SmilChr07G000974| 统一新 Gene ID | SmilChr07G000974 |
|---|---|
| 名称 | SmilChr07G000974 |
| 描述 | probable CoA ligase CCL7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7072136 - 7074459 / - |
| NCBI Gene ID | LOC130992129 |
|---|---|
| GeneID | 130992129 |
| locus_tag | - |
| NCBI Name | LOC130992129 |
| 原始查询 | SmilChr07G000974 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable CoA ligase CCL7 |
| 产物 | probable CoA ligase CCL7 |
| Arabidopsis | AT4G05160 (AT4G05160)AMP-dependent synthetase and ligase family protein [Source:NCBI gene (formerly Entrezgene);Acc:825864] identity=54.8; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0152400 (OsACS1)- identity=49.5; qcov=1; evalue=1.33e-174; confidence=high |
| GO | GO:0016405 (CoA-ligase activity) |
| KEGG | smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00501 (AMP-binding); PF13193 (AMP-binding_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992129 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057772622.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772622.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772622.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772622.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772622.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7072654 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,D4 |
Chr7:7072973 |
G |
A |
EMS_canonical_SNV | stop_gained | 68 | A15,A18,A19,A20,A21,B100,B104,B106,B108,B127,B129,B13,B130,B133,B134,B138,B14,B15,B2,B36,B4,B42,B43,B45,B46,B47,B50,B57,B68,B72,B75,B79,B83,B85,B89,B90,B92,B93,B97,B98,C10,C14,C16,C21,C22,C23,C25,C32,C37,C39,C44,C46,C47,C5,C50,C59,C6,C63,C65,C78,C79,C8,C80,C85,C86,D10,D11,D7 |
Chr7:7073171 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B15 |
Chr7:7073171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr7:7073267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C47 |
Chr7:7073302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B92,C68,C8,D4 |
Chr7:7073500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:7073511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:7073850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B1,B129,B41,C10,C42 |
Chr7:7073933 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C72,D10 |
Chr7:7074002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B3,C15 |
Chr7:7074115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B36,B42,B43,B79,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772622.1PF00501
AMP-binding 44-398 aa
PF13193
AMP-binding_C 449-524 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772622.1 |
Pfam | PF00501 |
AMP-binding | Family | 44 | 398 | 1.1e-88 | 298.4 | AMP-binding enzyme |
XP_057772622.1 |
Pfam | PF13193 |
AMP-binding_C | Domain | 449 | 524 | 8.7e-17 | 62.5 | AMP-binding enzyme C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。