当前解析结果
SmilChr07G000998| 统一新 Gene ID | SmilChr07G000998 |
|---|---|
| 名称 | SmilChr07G000998 |
| 描述 | uncharacterized SmilChr07G000998 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7256762 - 7262435 / + |
| NCBI Gene ID | LOC130992111 |
|---|---|
| GeneID | 130992111 |
| locus_tag | - |
| NCBI Name | LOC130992111 |
| 原始查询 | SmilChr07G000998 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511]; symbol=AT3G19740; hit=AT3G19740; species=arabidopsis; confidence=high |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511]; symbol=AT3G19740; hit=AT3G19740; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G19740 (AT3G19740)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821511] identity=55.9; qcov=0.752; evalue=0; confidence=high |
| Rice | Os06g0225900- identity=62.5; qcov=0.433; evalue=6.61e-155; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF17862 (AAA_lid_3); PF24933 (DUF7751) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992111 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057772593.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057772593.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772593.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772593.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772593.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7256859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B77,C63 |
Chr7:7256863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,C19,C49,C74 |
Chr7:7256972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:7256976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B139,C73 |
Chr7:7257000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:7257297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:7257509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,C10,C42 |
Chr7:7257695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,A7,B72,C60,D7 |
Chr7:7257763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B72,C41,C53 |
Chr7:7257802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,A20,B59,C1 |
Chr7:7257809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:7258163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B90,B92,C21,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772593.1PF24933
DUF7751 453-507 aa
PF00004
AAA 588-717 aa
PF17862
AAA_lid_3 739-775 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772593.1 |
Pfam | PF24933 |
DUF7751 | Domain | 453 | 507 | 1.7e-08 | 35.4 | Domain of unknown function (DUF7751) |
XP_057772593.1 |
Pfam | PF00004 |
AAA | Domain | 588 | 717 | 4.4e-37 | 128.2 | ATPase family associated with various cellular activities (AAA) |
XP_057772593.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 739 | 775 | 1.2e-10 | 41.4 | AAA+ lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。