当前解析结果
SmilChr07G001004| 统一新 Gene ID | SmilChr07G001004 |
|---|---|
| 名称 | SmilChr07G001004 |
| 描述 | ABC transporter G family member 11-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7315264 - 7319318 / + |
| NCBI Gene ID | LOC130992118 |
|---|---|
| GeneID | 130992118 |
| locus_tag | - |
| NCBI Name | LOC130992118 |
| 原始查询 | SmilChr07G001004 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 11-like |
| 产物 | ABC transporter G family member 11-like |
| Arabidopsis | AT1G17840 (ABCG11)white-brown complex-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838363] identity=72.6; qcov=0.955; evalue=0; confidence=high |
| Rice | Os10g0494300 (ABCG26)- identity=72.1; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992118 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772605.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057772605.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057772605.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772605.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772605.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7315753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr7:7316152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C53 |
Chr7:7316170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B22,B41,C10,C42,C71 |
Chr7:7316427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,C10,C63 |
Chr7:7316483 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C63 |
Chr7:7316847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B56,B96,C85 |
Chr7:7317071 |
A |
AAC |
2bp_insertion | frameshift_variant | 1 | D11 |
Chr7:7317071 |
A |
AAC |
2bp_insertion | CDS_variant | 1 | D11 |
Chr7:7317110 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr7:7317535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:7317657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B93,C86,C87 |
Chr7:7318996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772605.1PF00005
ABC_tran 54-205 aa
PF19055
ABC2_membrane_7 234-289 aa
PF01061
ABC2_membrane 367-576 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772605.1 |
Pfam | PF00005 |
ABC_tran | Domain | 54 | 205 | 7.7e-26 | 92.0 | ABC transporter |
XP_057772605.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 234 | 289 | 2.6e-14 | 53.6 | ABC-2 type transporter |
XP_057772605.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 367 | 576 | 3e-38 | 132.2 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。