Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001017`

染色体: Chr07 坐标: 7386178-7389248 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001017`
名称	SmilChr07G001017
描述	heat shock cognate 70 kDa protein-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7386178 - 7389248 / `+`

ID 对照

NCBI Gene ID	`LOC130992121`
GeneID	`130992121`
locus_tag	`-`
NCBI Name	`LOC130992121`
原始查询	`SmilChr07G001017`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heat shock cognate 70 kDa protein-like
产物	heat shock cognate 70 kDa protein-like
Arabidopsis	`AT3G12580` (HSP70) heat shock protein 70 [Source:NCBI gene (formerly Entrezgene);Acc:820438] identity=73.7; qcov=0.998; evalue=0; confidence=high
Rice	`Os01g0840100` (OsMed37_1) - identity=74.5; qcov=0.998; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:130992121

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057772614.1`
2	Cytoplasm	细胞质	0.80000	`XP_057772614.1`
3	Nucleus	细胞核	0.00000	`XP_057772614.1`
4	Chromosome	染色体	0.00000	`XP_057772614.1`
5	Centromere	着丝粒	0.00000	`XP_057772614.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7386402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C53
`Chr7:7386443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C71,D6
`Chr7:7386450`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B42
`Chr7:7386450`	`GC`	`G`	1bp_deletion	CDS_variant	1	B42
`Chr7:7386509`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr7:7387541`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D10
`Chr7:7387541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:7387602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr7:7387605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr7:7387620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C60
`Chr7:7387638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C60
`Chr7:7387672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772614.1

613 aa

306

613

HSP70

MreB_Mbl

PF00012 HSP70 9-611 aa PF06723 MreB_Mbl 142-384 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772614.1`	Pfam	`PF00012`	HSP70	Family	9	611	3.6e-230	766.0	Hsp70 protein
`XP_057772614.1`	Pfam	`PF06723`	MreB_Mbl	Family	142	384	3.6e-15	56.4	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916631.1
GGAGACAAATAAAAATTTGTGTTTGGTTGACTTAGATATGCCACTTTAGAAATAAGTGTATTTACCATACTATTCCTATTTTTTTGTGGTACATTACAAGCTTTCCCTCAGATTTTTTTTACGGGAGAACGGTTTGAAGGGCTTTTTACAGAAGTGTCTGCTTATTTGTTTTGATTTTTGAGTTGAAGCGTTGTTTATCGTTGGCATCAATGGCGGGCAAAGGGGAAGGACGTGCGATCGGGATCGATTTGGGAACTACC...

CDS

1 records

下载 CDS FASTA

LOC130992121
ATGGCGGGCAAAGGGGAAGGACGTGCGATCGGGATCGATTTGGGAACTACCTACTCGTGCGCGGCGGCATGGCAGCACGACCGCATTGAGATCATACCGAATGATCAGGGCAACCGTACCACGCCGTCTTACGTGGCCTTCACCGACTCCGAGCGTCTCATCGGAGACGCCGCCAAGAATCAAGTCGCCAATAATCCCACCCGCACTATTTTCGATGCAAAGAGGCTGATCGGCCGCAAATTCAGTGATCCAAAGGTTCA...

Protein

1 records

下载 Protein FASTA

XP_057772614.1
MAGKGEGRAIGIDLGTTYSCAAAWQHDRIEIIPNDQGNRTTPSYVAFTDSERLIGDAAKNQVANNPTRTIFDAKRLIGRKFSDPKVQDDMVHWPFKVIPDPTDRPMMVVNYKGEEKQFSAEEISSMVLTKMKLVAEAYLGSTVKNAVVTVPAYFNDSQRRATKDAGAIAGLNVMRIINEPTAAVIAYVLDKNAISYEGKNVLIFDLGGGTFDVSLVTIKGGIIKVQAIAGDTHLGGQDFDNRMVNHFVKEFKQKKNKDIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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