当前解析结果
SmilChr07G001020| 统一新 Gene ID | SmilChr07G001020 |
|---|---|
| 名称 | SmilChr07G001020 |
| 描述 | uncharacterized SmilChr07G001020 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7419070 - 7420657 / + |
| NCBI Gene ID | LOC130992156 |
|---|---|
| GeneID | 130992156 |
| locus_tag | - |
| NCBI Name | LOC130992156 |
| 原始查询 | SmilChr07G001020 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartate-glutamate racemase family [Source:NCBI gene (formerly Entrezgene);Acc:838111]; symbol=AT1G15410; hit=AT1G15410; species=arabidopsis; confidence=high |
| 产物 | aspartate-glutamate racemase family [Source:NCBI gene (formerly Entrezgene);Acc:838111]; symbol=AT1G15410; hit=AT1G15410; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G15410 (AT1G15410)aspartate-glutamate racemase family [Source:NCBI gene (formerly Entrezgene);Acc:838111] identity=50; qcov=0.822; evalue=9.47e-88; confidence=high |
| Rice | Os01g0555200- identity=45.8; qcov=0.898; evalue=2.25e-71; confidence=high |
| GO | GO:0006807 (GO:0006807); GO:0036361 (GO:0036361) |
| KEGG | - |
| Pfam | PF01177 (Asp_Glu_race) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992156 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057772667.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057772667.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057772667.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772667.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772667.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7419526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr7:7419724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,B80,C37 |
Chr7:7419726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B93,C86,C87 |
Chr7:7419993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B61,B91,C31,C60 |
Chr7:7420077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:7420423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B44,B69,D11 |
Chr7:7420465 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B76,C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772667.1PF01177
Asp_Glu_race 132-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772667.1 |
Pfam | PF01177 |
Asp_Glu_race | Family | 132 | 289 | 4.3e-16 | 60.1 | Asp/Glu/Hydantoin racemase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。