Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G001022`

染色体: Chr07 坐标: 7430987-7436146 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G001022`
名称	SmilChr07G001022
描述	uncharacterized SmilChr07G001022
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	7430987 - 7436146 / `+`

ID 对照

NCBI Gene ID	`LOC130992140`
GeneID	`130992140`
locus_tag	`-`
NCBI Name	`LOC130992140`
原始查询	`SmilChr07G001022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mov34/MPN/PAD-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844361]; symbol=BRCC36A; hit=AT1G80210; species=arabidopsis; confidence=high
产物	Mov34/MPN/PAD-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844361]; symbol=BRCC36A; hit=AT1G80210; species=arabidopsis; confidence=high
Arabidopsis	`AT1G80210` (BRCC36A) Mov34/MPN/PAD-1 family protein [Source:NCBI gene (formerly Entrezgene);Acc:844361] identity=66.2; qcov=0.904; evalue=6.61e-179; confidence=high
Rice	`Os05g0542600` - identity=57.4; qcov=0.96; evalue=9.29e-158; confidence=high
GO	GO:0004843 (cysteine-type deubiquitinase activity); GO:0006302 (double-strand break repair); GO:0008237 (metallopeptidase activity); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0070531 (BRCA1-A complex); GO:0070537 (GO:0070537); GO:0070552 (BRISC complex)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF01398 (JAB); PF14464 (Prok-JAB); PF18110 (BRCC36_C)
InterPro	-
eggNOG	-
NR	GeneID:130992140

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772649.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772649.1`
3	Nucleoplasm	核质	0.80000	`XP_057772649.1`
4	Cytosol	细胞质基质	0.60000	`XP_057772649.1`
5	Chromosome	染色体	0.00000	`XP_057772649.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:7431295`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B86,C13
`Chr7:7431295`	`TC`	`T`	1bp_deletion	CDS_variant	2	B86,C13
`Chr7:7434096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:7434608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr7:7435310`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C62
`Chr7:7435462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B44,B80,C37
`Chr7:7435748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,C15,C72
`Chr7:7435852`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B52,B98,C55,D5
`Chr7:7435910`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B137,B26,C64,C66
`Chr7:7435910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B137,B26,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772649.1

428 aa

214

428

JAB

Prok-JAB

BRCC36_C

PF01398 JAB 3-118 aa PF14464 Prok-JAB 10-113 aa PF18110 BRCC36_C 292-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772649.1`	Pfam	`PF01398`	JAB	Domain	3	118	7.9e-19	68.3	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
`XP_057772649.1`	Pfam	`PF14464`	Prok-JAB	Family	10	113	7.1e-08	33.1	Prokaryotic homologs of the JAB domain
`XP_057772649.1`	Pfam	`PF18110`	BRCC36_C	Domain	292	373	2.9e-22	79.3	BRCC36 C-terminal helical domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916666.1
TTCGCATTTTCCCCAAACCCCAAACCAAACCCCCACGTATCTAACATCAATACGAGCTAGAAATCGAAAGTTTCAAGACATTTTAGAAGAAAATAAACAAAATTGTGCAGGACAAAGGTCTCTTGAGAGAGATATATGTTGGTTCGTAGGAGATTGAGAACATTCTGATCGATATATATATAGAGAGAGAGAGAGATAAAGGGAGTAAGGTAGTGAGAGAGAAGAGGGCGAGCCAGAGAGAAGGGATGTCTCTAACAAGC...

CDS

1 records

下载 CDS FASTA

LOC130992140
ATGTCTCTAACAAGCGTGAAGATGTCGGAGGATGTGTGGTTGACGTGTCTGACCCATGCATTGTCCACTGAGACTGAGGAGATCATGGGCCTTCTTCTTGGTGATATACAGAGTTCAAAGAATGGTAATGTAACTGCATTGATTTGGGGAGCACTTCCACAACCACGTTCTGATCGACAGAAGGATAGAGTAGAGACTAACCCAGAGCAGCTGACTGCTGCATCAGTTCATGCTGAGAGAATGACAACGGAAACAGGGAC...

Protein

1 records

下载 Protein FASTA

XP_057772649.1
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQSSKNGNVTALIWGALPQPRSDRQKDRVETNPEQLTAASVHAERMTTETGTTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFSEDAQKVGRIQVIAFQSMDGKQGHMMKPLSLTPVLKSAIIDVESSMSSSDNAIAVFGSSKGETMEQDTGDSEAAGRASKGSGKSPRLGGFFANANAKTGNNSHANSLNDAIHDLDPMDMTEGMQEAMHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器