当前解析结果
SmilChr07G001025| 统一新 Gene ID | SmilChr07G001025 |
|---|---|
| 名称 | SmilChr07G001025 |
| 描述 | uncharacterized SmilChr07G001025 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7446921 - 7449218 / - |
| NCBI Gene ID | LOC130992168 |
|---|---|
| GeneID | 130992168 |
| locus_tag | - |
| NCBI Name | LOC130992168 |
| 原始查询 | SmilChr07G001025 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841703]; symbol=AT1G52700; hit=AT1G52700; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841703]; symbol=AT1G52700; hit=AT1G52700; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G52700 (AT1G52700)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841703] identity=67.5; qcov=1; evalue=1.69e-125; confidence=high |
| Rice | Os01g0175000- identity=65.4; qcov=0.98; evalue=1.73e-121; confidence=high |
| GO | GO:0016787 (hydrolase activity) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02230 (Abhydrolase_2); PF03959 (FSH1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992168 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057772692.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057772692.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057772692.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772692.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772692.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7447544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:7447685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:7447880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B2,B41,C10,C42,C78 |
Chr7:7448088 |
TG |
T |
1bp_deletion | frameshift_variant | 143 | A10,A13,A15,A2,A23,A24,A25,A3,A5,A8,B101,B102,B106,B109,B11,B110,B111,B115,B117,B123,B124,B129,B13,B130,B131,B132,B136,B139,B14,B140,B19,B20,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B32,B33,B34,B35,B36,B38,B39,B41,B42,B43,B45,B47,B5,B50,B55,B56,B57,B60,B61,B62,B64,B66,B67,B68,B72,B73,B74,B76,B77,B78,B8,B82,B83,B85,B88,B89,B90,B91,B92,B93,B94,B96,B97,C1,C12,C13,C14,C2,C21,C23,C24,C25,C29,C33,C36,C37,C38,C4,C40,C41,C42,C43,C45,C46,C47,C48,C50,C51,C52,C56,C57,C59,C6,C60,C61,C62,C64,C65,C66,C7,C70,C73,C75,C76,C77,C78,C8,C80,C81,C82,C83,C84,C85,C86,D10,D2,D3,D5,D6,D7,D8 |
Chr7:7448092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772692.1PF02230
Abhydrolase_2 21-244 aa
PF03959
FSH1 76-212 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772692.1 |
Pfam | PF02230 |
Abhydrolase_2 | Domain | 21 | 244 | 7.1e-43 | 147.7 | Phospholipase/Carboxylesterase |
XP_057772692.1 |
Pfam | PF03959 |
FSH1 | Domain | 76 | 212 | 4.5e-08 | 33.7 | Serine hydrolase (FSH1) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。