当前解析结果
SmilChr07G001032| 统一新 Gene ID | SmilChr07G001032 |
|---|---|
| 名称 | SmilChr07G001032 |
| 描述 | uncharacterized SmilChr07G001032 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7538802 - 7540314 / - |
| NCBI Gene ID | LOC130993774 |
|---|---|
| GeneID | 130993774 |
| locus_tag | - |
| NCBI Name | LOC130993774 |
| 原始查询 | SmilChr07G001032 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | multiprotein bridging factor 1B [Source:NCBI gene (formerly Entrezgene);Acc:825037]; symbol=MBF1B; hit=AT3G58680; species=arabidopsis; confidence=low |
| 产物 | multiprotein bridging factor 1B [Source:NCBI gene (formerly Entrezgene);Acc:825037]; symbol=MBF1B; hit=AT3G58680; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G58680 (MBF1B)multiprotein bridging factor 1B [Source:NCBI gene (formerly Entrezgene);Acc:825037] identity=61.3; qcov=0.324; evalue=1.72e-44; confidence=low |
| Rice | Os08g0366100 (Edf)- identity=62.9; qcov=0.324; evalue=5.6e-38; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF08523 (MBF1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057774794.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057774794.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774794.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774794.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7538814 |
A |
AG |
1bp_insertion | frameshift_variant | 16 | B12,B123,B124,B136,B66,B98,C14,C17,C22,C24,C26,C29,C5,C55,C69,D4 |
Chr7:7538816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B40,C62 |
Chr7:7538863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:7538870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:7538885 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B57,B61 |
Chr7:7538885 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B57,B61 |
Chr7:7538890 |
G |
GC |
1bp_insertion | frameshift_variant | 2 | B57,B61 |
Chr7:7538890 |
G |
GC |
1bp_insertion | CDS_variant | 2 | B57,B61 |
Chr7:7538896 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B57,B61 |
Chr7:7538896 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B57,B61 |
Chr7:7538904 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B57,B66 |
Chr7:7538904 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B57,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774794.1PF08523
MBF1 137-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774794.1 |
Pfam | PF08523 |
MBF1 | Family | 137 | 207 | 3.1e-21 | 76.3 | Multiprotein bridging factor 1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。