Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001035

染色体: Chr07 坐标: 7551094-7555452 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001035
名称SmilChr07G001035
描述uncharacterized SmilChr07G001035
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向7551094 - 7555452 / -

ID 对照

NCBI Gene IDLOC130992204
GeneID130992204
locus_tag-
NCBI NameLOC130992204
原始查询SmilChr07G001035

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368]; symbol=AT1G80280; hit=AT1G80280; species=arabidopsis; confidence=high
产物alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368]; symbol=AT1G80280; hit=AT1G80280; species=arabidopsis; confidence=high
ArabidopsisAT1G80280 (AT1G80280)
alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368]
identity=63.5; qcov=1.03; evalue=0; confidence=high
RiceOs01g0647700
-
identity=56.5; qcov=1.03; evalue=0; confidence=high
GOGO:0003824 (catalytic activity)
KEGG-
PfamPF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6)
InterPro-
eggNOG-
NRGeneID:130992204

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057772736.1
2 Endoplasmic reticulum membrane 内质网膜 0.40000 XP_057772736.1
3 Nucleus membrane 核膜 0.20000 XP_057772736.1
4 Nucleus 细胞核 0.00000 XP_057772736.1
5 Chromosome 染色体 0.00000 XP_057772736.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:7551317 C T EMS_canonical_SNV CDS_variant 1 C30
Chr7:7551465 C T EMS_canonical_SNV CDS_variant 1 B49
Chr7:7551568 G A EMS_canonical_SNV CDS_variant 1 B84
Chr7:7552239 C T EMS_canonical_SNV CDS_variant 5 A2,B106,B28,C45,C78
Chr7:7552240 G A EMS_canonical_SNV CDS_variant 2 A19,C83
Chr7:7552283 G A EMS_canonical_SNV CDS_variant 1 B14
Chr7:7552936 ACT A 2bp_deletion frameshift_variant 1 B136
Chr7:7552936 ACT A 2bp_deletion CDS_variant 1 B136
Chr7:7553081 G A EMS_canonical_SNV CDS_variant 4 B103,B93,C86,C87
Chr7:7553248 G A EMS_canonical_SNV CDS_variant 5 B20,B34,B53,B58,B99
Chr7:7554819 G A EMS_canonical_SNV CDS_variant 1 D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772736.1
635 aa
N
1
318
635
Abhydrolase_1
Abhydrolase_6
C
PF00561 Abhydrolase_1 357-610 aa PF12697 Abhydrolase_6 357-617 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772736.1 Pfam PF00561 Abhydrolase_1 Domain 357 610 9.7e-17 62.1 alpha/beta hydrolase fold
XP_057772736.1 Pfam PF12697 Abhydrolase_6 Domain 357 617 2.7e-21 77.9 Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916753.1
ACTGTCATCTCAATTATATATTTCCATTTATTTATTTAGAAATGTTGGACAGTTGAGACTTTTCTTTGATTCGATGATAACAACTCGGATTGAGCACACACTGATTCGCCCTTTCTCTCTCACACATTCAAAAAACAACACAACAGAGGAGATAGAATAAAAGACTCCGGCGACAGAAGAACAAGAAAATAACACAGAAAATTCATTCTTTCACTCTCTACTTTCCTTTTTACCAAAATGTTTATAATTTTTCAATTTCT...

CDS

1 records

下载 CDS FASTA
LOC130992204
ATGATGATGAAGGGCGGTTGGTGGTGGGAGAAGGTGCGGAGAGGAGTGAGGACGGTTTATTTCATGGTGGCGATGGTTTCGTCGCTGCTCGTGGTGGCGTTGCCGGTGGTGGTGGCGATCGTCGACGCCGTTTTGCCGTGTTTGTTAATATCTAGCTTTACGTGCGTCAAATGCTATAGCTTTAGGGAACATTTGCAGAGATACGCCTTCAAGAGCTCGCTTGTGGATATTCCTCTTGTTTCCATTATCAGATCTCTCGT...

Protein

1 records

下载 Protein FASTA
XP_057772736.1
MMMKGGWWWEKVRRGVRTVYFMVAMVSSLLVVALPVVVAIVDAVLPCLLISSFTCVKCYSFREHLQRYAFKSSLVDIPLVSIIRSLVIICVYTMCDGPALSHGPYLGTVTICSFVSILVLSIKACVFTVHAQLEGVASASLSRKRLHLKKSWGMPVLFLSSVVFALGHIVVAYRTSCKARRKFSFHRDPEAVLSCKMIFSGYQKAPRSPTPVGKSFRSESATRRRAPGLAHDDGEFPVSLLADKDSLFLSCLGLTVHYKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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