当前解析结果
SmilChr07G001035| 统一新 Gene ID | SmilChr07G001035 |
|---|---|
| 名称 | SmilChr07G001035 |
| 描述 | uncharacterized SmilChr07G001035 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7551094 - 7555452 / - |
| NCBI Gene ID | LOC130992204 |
|---|---|
| GeneID | 130992204 |
| locus_tag | - |
| NCBI Name | LOC130992204 |
| 原始查询 | SmilChr07G001035 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368]; symbol=AT1G80280; hit=AT1G80280; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368]; symbol=AT1G80280; hit=AT1G80280; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G80280 (AT1G80280)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844368] identity=63.5; qcov=1.03; evalue=0; confidence=high |
| Rice | Os01g0647700- identity=56.5; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057772736.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057772736.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057772736.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772736.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772736.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7551317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:7551465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr7:7551568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:7552239 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B106,B28,C45,C78 |
Chr7:7552240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,C83 |
Chr7:7552283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:7552936 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B136 |
Chr7:7552936 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | B136 |
Chr7:7553081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B93,C86,C87 |
Chr7:7553248 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B20,B34,B53,B58,B99 |
Chr7:7554819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772736.1PF00561
Abhydrolase_1 357-610 aa
PF12697
Abhydrolase_6 357-617 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772736.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 357 | 610 | 9.7e-17 | 62.1 | alpha/beta hydrolase fold |
XP_057772736.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 357 | 617 | 2.7e-21 | 77.9 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。