当前解析结果
SmilChr07G001038| 统一新 Gene ID | SmilChr07G001038 |
|---|---|
| 名称 | SmilChr07G001038 |
| 描述 | pectin acetylesterase 8-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 7590393 - 7612388 / + |
| NCBI Gene ID | LOC130992207 |
|---|---|
| GeneID | 130992207 |
| locus_tag | - |
| NCBI Name | LOC130992207 |
| 原始查询 | SmilChr07G001038 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pectin acetylesterase 8-like |
| 产物 | pectin acetylesterase 8-like |
| Arabidopsis | AT4G19420 (AT4G19420)Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827683] identity=43.7; qcov=0.912; evalue=2.49e-112; confidence=medium |
| Rice | Os02g0702400- identity=42.1; qcov=0.954; evalue=7.47e-109; confidence=medium |
| GO | GO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization) |
| KEGG | - |
| Pfam | PF03283 (PAE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992207 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell wall | 细胞壁 | 0.40000 | XP_057772741.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057772743.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057772741.1 |
| 4 | Cell membrane | 细胞膜 | 0.20000 | XP_057772741.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772743.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:7590951 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:7591138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:7591376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B66,B8,C72,C73 |
Chr7:7591390 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | A16,B58,C31,C60 |
Chr7:7591390 |
TA |
T |
1bp_deletion | CDS_variant | 4 | A16,B58,C31,C60 |
Chr7:7591751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B128,B136,B32,B91 |
Chr7:7591773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B128,B136,B32,B91 |
Chr7:7591935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:7591969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:7591977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B42,B79,C45 |
Chr7:7591996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B128,B136,B32,B91 |
Chr7:7592028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772741.1PF03283
PAE 30-378 aa
XP_057772742.1PF03283
PAE 30-378 aa
XP_057772743.1PF03283
PAE 30-378 aa
XP_057772744.1PF03283
PAE 30-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772741.1 |
Pfam | PF03283 |
PAE | Family | 30 | 378 | 7.2e-121 | 404.5 | Pectinacetylesterase |
XP_057772742.1 |
Pfam | PF03283 |
PAE | Family | 30 | 378 | 7.2e-121 | 404.5 | Pectinacetylesterase |
XP_057772743.1 |
Pfam | PF03283 |
PAE | Family | 30 | 378 | 1.2e-119 | 400.4 | Pectinacetylesterase |
XP_057772744.1 |
Pfam | PF03283 |
PAE | Family | 30 | 378 | 2.8e-119 | 399.2 | Pectinacetylesterase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。