Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G001038

染色体: Chr07 坐标: 7590393-7612388 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G001038
名称SmilChr07G001038
描述pectin acetylesterase 8-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向7590393 - 7612388 / +

ID 对照

NCBI Gene IDLOC130992207
GeneID130992207
locus_tag-
NCBI NameLOC130992207
原始查询SmilChr07G001038

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pectin acetylesterase 8-like
产物pectin acetylesterase 8-like
ArabidopsisAT4G19420 (AT4G19420)
Pectinacetylesterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827683]
identity=43.7; qcov=0.912; evalue=2.49e-112; confidence=medium
RiceOs02g0702400
-
identity=42.1; qcov=0.954; evalue=7.47e-109; confidence=medium
GOGO:0009505 (plant-type cell wall); GO:0052793 (pectin acetylesterase activity); GO:0071555 (cell wall organization)
KEGG-
PfamPF03283 (PAE)
InterPro-
eggNOG-
NRGeneID:130992207

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell wall 细胞壁 0.40000 XP_057772741.1
2 Vacuole 液泡 0.40000 XP_057772743.1
3 Secreted 分泌到胞外 0.20000 XP_057772741.1
4 Cell membrane 细胞膜 0.20000 XP_057772741.1
5 Nucleus 细胞核 0.00000 XP_057772743.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:7590951 C T EMS_canonical_SNV CDS_variant 1 D10
Chr7:7591138 C T EMS_canonical_SNV CDS_variant 1 B66
Chr7:7591376 C T EMS_canonical_SNV CDS_variant 4 B66,B8,C72,C73
Chr7:7591390 TA T 1bp_deletion frameshift_variant 4 A16,B58,C31,C60
Chr7:7591390 TA T 1bp_deletion CDS_variant 4 A16,B58,C31,C60
Chr7:7591751 G A EMS_canonical_SNV CDS_variant 5 B123,B128,B136,B32,B91
Chr7:7591773 G A EMS_canonical_SNV CDS_variant 5 B123,B128,B136,B32,B91
Chr7:7591935 C T EMS_canonical_SNV CDS_variant 1 C30
Chr7:7591969 G A EMS_canonical_SNV CDS_variant 1 C8
Chr7:7591977 C T EMS_canonical_SNV CDS_variant 4 B36,B42,B79,C45
Chr7:7591996 G A EMS_canonical_SNV CDS_variant 5 B123,B128,B136,B32,B91
Chr7:7592028 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772741.1
420 aa
N
1
210
420
PAE
C
PF03283 PAE 30-378 aa
XP_057772742.1
420 aa
N
1
210
420
PAE
C
PF03283 PAE 30-378 aa
XP_057772743.1
411 aa
N
1
206
411
PAE
C
PF03283 PAE 30-378 aa
XP_057772744.1
411 aa
N
1
206
411
PAE
C
PF03283 PAE 30-378 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772741.1 Pfam PF03283 PAE Family 30 378 7.2e-121 404.5 Pectinacetylesterase
XP_057772742.1 Pfam PF03283 PAE Family 30 378 7.2e-121 404.5 Pectinacetylesterase
XP_057772743.1 Pfam PF03283 PAE Family 30 378 1.2e-119 400.4 Pectinacetylesterase
XP_057772744.1 Pfam PF03283 PAE Family 30 378 2.8e-119 399.2 Pectinacetylesterase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057916761.1
ACTTTCTCCTTCCCCATTTCTGGGAAGTTTTAACTTTTGTGATAAATGCACGGTATGGGTTTCTTAGTTGAAATCAACTCATATTAAGCTTGCAAGTTCTGCTTCCTTCCCTCCCTATAAAGAGGGCTCATACTTAGCATTCAACCTCACCATTACTTCCAGTTTCTTTCAAGCTTCCTCACACTCTCCTCTTTTTACCCAATCCTCTGTTTTCTCTTCAAAAGTTACACAAGAATGGCGAAAGGCAGCATCACTATAGA...
XM_057916759.1
CTCCTTCCCCATTTCTGGGAAGTTTTAACTTTTGTGATAAATGCACGGTATGGGTTTCTTAGTTGAAATCAACTCATATTAAGCTTGCAAGTTCTGCTTCCTTCCCTCCCTATAAAGAGGGCTCATACTTAGCATTCAACCTCACCATTACTTCCAGTTTCTTTCAAGCTTCCTCACACTCTCCTCTTTTTACCCAATCCTCTGTTTTCTCTTCAAAAGTTACACAAGGTTTTCTTTCTTTCTAATCTCTGAATTCAAAA...

CDS

4 records

下载 CDS FASTA
LOC130992207
ATGGCGAAAGGCAGCATCACTATAGATGGTTGGCTGAGTTTATTGATTTGTTCACTTGTGATGAATGCTCAAGTCCATGGCGATACCCTCGCCCCTGTTACTATTCTAGACAGCGCCATCCCTAAAGGAGCAGTTTGCCTTGATGGGAGTGCACCAGCGTACTCTTACGCTGAGGGATCTGGAGACGGAGCTGATAGTTGGATCGTGTATCTGCAAGGTGGTGGATGGTGTTACAACCTAACCGATTGCTATAGCAGATC...
LOC130992207
ATGGCGAAAGGCAGCATCACTATAGATGGTTGGCTGAGTTTATTGATTTGTTCACTTGTGATGAATGCTCAAGTCCATGGCGATACCCTCGCCCCTGTTACTATTCTAGACAGCGCCATCCCTAAAGGAGCAGTTTGCCTTGATGGGAGTGCACCAGCGTACTCTTACGCTGAGGGATCTGGAGACGGAGCTGATAGTTGGATCGTGTATCTGCAAGGTGGTGGATGGTGTTACAACCTAACCGATTGCTATAGCAGATC...

Protein

4 records

下载 Protein FASTA
XP_057772741.1
MAKGSITIDGWLSLLICSLVMNAQVHGDTLAPVTILDSAIPKGAVCLDGSAPAYSYAEGSGDGADSWIVYLQGGGWCYNLTDCYSRSRTYLGSSHFIASQTNFSALLDLNCTSNPDFCNWHKVYITYCDGSSFMSDILDSKTNLSFRGARIFNVMMEEMLAKGMRNAKQAILTGSSAGGLATMLHCDKFRKLFSNATRVKCISDSGFFLHGKGLRGIQFREYFYGYVIKTHELANSLPLTCTSKRNPNLCLFPEYFAGDI...
XP_057772742.1
MAKGSITIDGWLSLLICSLVMNAQVHGDTLAPVTILDSAIPKGAVCLDGSAPAYSYAEGSGDGADSWIVYLQGGGWCYNLTDCYSRSRTYLGSSHFIASQTNFSALLDLNCTSNPDFCNWHKVYITYCDGSSFMSDILDSKTNLSFRGARIFNVMMEEMLAKGMRNAKQAILTGSSAGGLATMLHCDKFRKLFSNATRVKCISDSGFFLHGKGLRGIQFREYFYGYVIKTHELANSLPLTCTSKRNPNLCLFPEYFAGDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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